 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Ciclev10012352m |
| Common Name | CICLE_v10012352mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 294aa MW: 33257.1 Da PI: 7.0001 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Ciclev10012352m | genome | ICGC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 54.7 | 1.7e-17 | 77 | 129 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+ +++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k
Ciclev10012352m 77 KKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWK 129
4568889*********************************************9 PP
|
| 2 | HD-ZIP_I/II | 128.5 | 2.7e-41 | 75 | 166 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
ekk+rl+ eqvk+LE+sFe +kLeperK +lar+Lglqprq+a+WFqnrRAR+ktkqlEkdye+Lk++++alk++n++L++++++L++el
Ciclev10012352m 75 EKKKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYEVLKKQFEALKDDNDSLQAQNKKLHAELV 166
69**************************************************************************************9986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 294 aa
Download sequence Send
to blast |
MAFPPHSFMF QSHEDNDHLP SPTSLNSLPA PHFFHGAPFM MKRSMSFSGV NDKCHEDHHV 60
HGDEDLSDDG SQVGEKKKRL NLEQVKALEK SFELGNKLEP ERKLQLARAL GLQPRQIAIW 120
FQNRRARWKT KQLEKDYEVL KKQFEALKDD NDSLQAQNKK LHAELVSLKN KDSNNGQVIH 180
LKKENEGSAS NGSDNSSDIN LDISRTQVIT SPVSSSHLTS KQLFPTSTRP AAGSMTQLLQ 240
GSSIPDHLQC LKIDHHQMVQ VQDESFCHMF NGIEEQQATA SSFWQWPGQQ NFH*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 123 | 131 | RRARWKTKQ |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed predominantly in flowers, and in the cortex of the root and the stem. {ECO:0000269|PubMed:16055682}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
