PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10011872m
Common NameCICLE_v10011741mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 408aa    MW: 44515.3 Da    PI: 8.6906
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10011872mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.71.4e-111844127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                     ++++ C+++ rtG C++G++C+F+H+p
  Ciclev10011872m 18 PGEPDCSYYIRTGLCRFGATCRFNHPP 44
                     5789*********************97 PP
2zf-CCCH40.35.2e-136489227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                     ++++C+++++tGtCk+G++CkF+H++
  Ciclev10011872m 64 GQPECQYYLKTGTCKFGATCKFHHPR 89
                     5799********************96 PP
3zf-CCCH375.6e-12113135527
                      --SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                      +C +++rtG+Ck+G++CkF+H++
  Ciclev10011872m 113 ECAYYLRTGQCKFGSTCKFHHPQ 135
                      7********************97 PP
4zf-CCCH382.7e-12270296127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C+f+++tG Ck+G+ C+F+H++
  Ciclev10011872m 270 PGQPECQFYMKTGDCKFGAVCRFHHPR 296
                      5789*********************96 PP
5zf-CCCH40.35.4e-13316342127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++lC f++r+G+Ck+G++CkF H++
  Ciclev10011872m 316 PGEPLCIFYSRYGICKFGPSCKFDHPM 342
                      589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.1E-51744IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.5871745IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-81944IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-52245IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.6E-42343IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-66289IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.4136290IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-106589IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-66691IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-56889IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-5108135IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.225108136IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-6111136IPR000571Zinc finger, CCCH-type
PfamPF006429.8E-10113135IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-4114134IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-6269296IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.596269297IPR000571Zinc finger, CCCH-type
PfamPF006428.6E-9271296IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-6273299IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-5275297IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.709315343IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-7315342IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-10317342IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5318342IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-4320340IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MNLRTNEAME SGSLPERPGE PDCSYYIRTG LCRFGATCRF NHPPNRKLAI ATARIKGDYP  60
ERLGQPECQY YLKTGTCKFG ATCKFHHPRD KAGIAGRVSL NVLGYPLRPN EIECAYYLRT  120
GQCKFGSTCK FHHPQPNNMM VSLRGSPVYP TVQSPTTPSQ QSYAGGITNW SRASFIPSPR  180
WQGPSSYAPM LLPQGMVSVP GWNTYSGQLG SVSSSENLQQ TSGNSQIYGA SRQTEPSNSG  240
SQGTMSPFRS GSIPVGFYAL QRESVFPERP GQPECQFYMK TGDCKFGAVC RFHHPRERLL  300
PVPDCVLSPI GLPLRPGEPL CIFYSRYGIC KFGPSCKFDH PMGIFTYNLS ASSSADAPVR  360
RFLGSSSATG ALNLSSEGLV EAGSGRRLSL PETRQMSSGD DEIDTEG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.198360.0flower
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006480413.10.0zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_024037223.10.0zinc finger CCCH domain-containing protein ZFN-like
RefseqXP_024955986.10.0zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_024955987.10.0zinc finger CCCH domain-containing protein ZFN-like isoform X1
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLV4UQN00.0V4UQN0_9ROSI; Uncharacterized protein
STRINGXP_006480413.10.0(Citrus sinensis)
STRINGXP_006428579.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-177zinc finger protein 1