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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Ciclev10011741m |
Common Name | CICLE_v10011741mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family |
C3H |
Protein Properties |
Length: 440aa MW: 47859 Da PI: 8.512 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Ciclev10011741m | genome | ICGC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 35.6 | 1.6e-11 | 50 | 76 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
++++ C+++ rtG C++G++C+F+H+p
Ciclev10011741m 50 PGEPDCSYYIRTGLCRFGATCRFNHPP 76
5789*********************97 PP
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2 | zf-CCCH | 40.2 | 5.8e-13 | 96 | 121 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
++++C+++++tGtCk+G++CkF+H++
Ciclev10011741m 96 GQPECQYYLKTGTCKFGATCKFHHPR 121
5799********************96 PP
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3 | zf-CCCH | 36.9 | 6.1e-12 | 145 | 167 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27
+C +++rtG+Ck+G++CkF+H++
Ciclev10011741m 145 ECAYYLRTGQCKFGSTCKFHHPQ 167
7********************97 PP
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4 | zf-CCCH | 37.9 | 3e-12 | 302 | 328 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+++++C+f+++tG Ck+G+ C+F+H++
Ciclev10011741m 302 PGQPECQFYMKTGDCKFGAVCRFHHPR 328
5789*********************96 PP
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5 | zf-CCCH | 40.1 | 5.9e-13 | 348 | 374 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
++++lC f++r+G+Ck+G++CkF H++
Ciclev10011741m 348 PGEPLCIFYSRYGICKFGPSCKFDHPM 374
589**********************95 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00356 | 2.1E-5 | 49 | 76 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.587 | 49 | 77 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.5E-8 | 51 | 76 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.14E-5 | 54 | 77 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.3E-4 | 55 | 75 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.9E-6 | 94 | 121 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.413 | 94 | 122 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.3E-10 | 97 | 121 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-6 | 98 | 123 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.6E-5 | 100 | 121 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.9E-5 | 140 | 167 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.225 | 140 | 168 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.4E-6 | 143 | 168 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-9 | 145 | 167 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.0E-4 | 146 | 166 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.8E-6 | 301 | 328 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.596 | 301 | 329 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.4E-9 | 303 | 328 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.16E-6 | 305 | 331 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.7E-5 | 307 | 329 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.6E-7 | 347 | 374 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.709 | 347 | 375 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-10 | 349 | 374 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-5 | 350 | 374 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.2E-4 | 352 | 372 | IPR000571 | Zinc finger, CCCH-type |
Sequence ? help Back to Top |
Protein Sequence Length: 440 aa
Download sequence Send
to blast |
MQFEAGISLS RGAAVTEGPS LSPSLNQDAL WQMNLRTNEA MESGSLPERP GEPDCSYYIR 60 TGLCRFGATC RFNHPPNRKL AIATARIKGD YPERLGQPEC QYYLKTGTCK FGATCKFHHP 120 RDKAGIAGRV SLNVLGYPLR PNEIECAYYL RTGQCKFGST CKFHHPQPNN MMVSLRGSPV 180 YPTVQSPTTP SQQSYAGGIT NWSRASFIPS PRWQGPSSYA PMLLPQGMVS VPGWNTYSGQ 240 LGSVSSSENL QQTSGNSQIY GASRQTEPSN SGSQGTMSPF RSGSIPVGFY ALQRESVFPE 300 RPGQPECQFY MKTGDCKFGA VCRFHHPRER LLPVPDCVLS PIGLPLRPGE PLCIFYSRYG 360 ICKFGPSCKF DHPMGIFTYN LSASSSADAP VRRFLGSSSA TGALNLSSEG LVEAGSGRRL 420 SLPETRQMSS GDDEIDTEG*
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