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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Ciclev10011338m |
| Common Name | CICLE_v10011338mg |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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| Family |
Trihelix |
| Protein Properties |
Length: 595aa MW: 67679.3 Da PI: 6.8999 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Ciclev10011338m | genome | ICGC | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 94.6 | 9.6e-30 | 141 | 226 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
rW++qe+l+L+e+r++++++++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea
Ciclev10011338m 141 RWPRQETLTLLEIRSRLDSKFKEANQKGPLWDEVSRIMsEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 226
8*************************************999*****************************98..55667*******85 PP
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| 2 | trihelix | 60.5 | 4.1e-19 | 441 | 516 | 2 | 75 |
trihelix 2 WtkqevlaLiearremeerlrrg..klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75
Wt++e+ Li++r+ me r++++ +++++lWeev++km g+e+++ +Ck+kw+ +n+++ k+k+g +k+++es
Ciclev10011338m 441 WTDSETTRLINLRTGMEARFQQSgcNSQEALWEEVASKMICLGYEKNALMCKDKWDCINNYMSKTKAGGNKKRKES 516
*********************9655699***************************************999875554 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009909 | Biological Process | regulation of flower development |
| GO:0010200 | Biological Process | response to chitin |
| GO:0046621 | Biological Process | negative regulation of organ growth |
| GO:0048442 | Biological Process | sepal development |
| GO:0048498 | Biological Process | establishment of petal orientation |
| GO:0090428 | Biological Process | perianth development |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 595 aa
Download sequence Send
to blast |
MEMEDHHPHS HQQQPQPQPQ HEYGMPDLRQ FITNRPSHHF PGIPQAAAAE LFPGHHRNLT 60
PQQGHHHHRH HHYEMLMMPR GLQDFTTPAP TTTTTSAAAN NVNNTTSNNT VTTASVSTPP 120
SFSGFEGDVA ASFGGDGGNG RWPRQETLTL LEIRSRLDSK FKEANQKGPL WDEVSRIMSE 180
EHGYQRSGKK CREKFENLYK YYKKTKEGKA GRQDGKHYRF FRQLEALYGD TSNSVSFQET 240
HLVGSSSLRF NHSTTQHQEP NFHSSSHQNK LCDNSLSLSN NSSEFNSSSS DDDDNDLSTM 300
ENDSTEKRRK KRGGRSWKAK IKEFIDSQMR KLMEKQEAWL EKLTKTLEQK EQERVLREEE 360
WRRQEQDRID KEHKFWAKER AWIESRDAAL MEALQNLTGK QLKAPSSTEE LMAAAVDADD 420
DQLQNNSDTN NGETVSNKYS WTDSETTRLI NLRTGMEARF QQSGCNSQEA LWEEVASKMI 480
CLGYEKNALM CKDKWDCINN YMSKTKAGGN KKRKESYSRS SSGYLPSSES CLYSQGTAYE 540
TARLQLNDSS SPGAASNSNV GNNAVSDSCF RFLMADGDHL WENYGLRLSN GENQ*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: First observed in the early-developing flower, in four zones between the initiating sepals and in their developing margins. Later detected in the margins of expanding sepals, petals and stamens, and in the leaf margins. {ECO:0000269|PubMed:15269176}. |
| Uniprot | TISSUE SPECIFICITY: Confined to flowers, at low levels. Also present in 7-days-old seedlings. Barely detectable in other tissues such as young seedlings, roots, stems, leaves and siliques (PubMed:15269176). Expressed in flower primordia, more precisely between newly arisen sepal primordia and also at the basal margins of developing sepals (PubMed:25697797). {ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:25697797}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}. |
