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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Ciclev10010768m |
Common Name | CICLE_v10010768mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family |
HB-other |
Protein Properties |
Length: 343aa MW: 39165.2 Da PI: 6.0925 |
Description |
HB-other family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Ciclev10010768m | genome | ICGC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 28.4 | 2.8e-09 | 273 | 321 | 6 | 54 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54
+++k q+++Le ++++++ p+ +++ + + ++L+ r++ WF +Ra
Ciclev10010768m 273 RLKKVQVKTLEMVYRRSKRPTDAMISSIVQVTNLPRRRIVKWFEDKRAE 321
57899******************************************96 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0002229 | Biological Process | defense response to oomycetes |
GO:0009414 | Biological Process | response to water deprivation |
GO:0009682 | Biological Process | induced systemic resistance |
GO:0009787 | Biological Process | regulation of abscisic acid-activated signaling pathway |
GO:0010118 | Biological Process | stomatal movement |
GO:0050832 | Biological Process | defense response to fungus |
GO:2000022 | Biological Process | regulation of jasmonic acid mediated signaling pathway |
GO:2000071 | Biological Process | regulation of defense response by callose deposition |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 343 aa
Download sequence Send
to blast |
MALTLSTSIC TSTSRAVHRL SPSQYLRLFP GHHRKPTNLL LPRHPPTRFT LAFSRRRNNN 60 PVTISSSKKK KKSLPRKDIK DSDEEDDPFE ALFSLLEEDL KNDDSTIDDD DEEIDEEDLD 120 KLATELAEAL GDVDMDMSDT ATDGTESDNN EAHKEDGEDE EEEEEREVRL KNWQLRKLAY 180 ALKTGRRKVS VKSLAAELCL DRAVVLEMLR DPPPNLLMLS ATLPDKPTPT VLVNEVKHSE 240 PIVAETTVHA VEPKSKVEEP VHDRQHRWSA QKRLKKVQVK TLEMVYRRSK RPTDAMISSI 300 VQVTNLPRRR IVKWFEDKRA EEGVPECRKP FQRSDPKTVF SG*
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 54 | 71 | RRRNNNPVTISSSKKKKK |
Functional Description ? help
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Source |
Description |
UniProt | May modulate chromatin structure by regulation of nucleosome assembly/disassembly (By similarity). Homeodomain transcription factor that mediates jasmonic acid (JA)-mediated COI1-dependent and abscisic acid (ABA)-mediated PMR4-dependent resistance to infection by necrotrophic fungal pathogens (e.g. B.cinerea and P.cucumerina) and bacterial pathogens (e.g. P.syringae DC3000); this resistance involves at least callose deposition (PubMed:15923348, PubMed:20836879, PubMed:21564353). Required for the P.fluorescens WCS417r-triggered JA-dependent induced systemic resistance (ISR) against both P.syringae DC3000 and H.arabidopsidis (PubMed:20836879). Negative regulator of the ABA-dependent drought resistance (PubMed:19175769). {ECO:0000250|UniProtKB:Q70Z19, ECO:0000269|PubMed:15923348, ECO:0000269|PubMed:19175769, ECO:0000269|PubMed:20836879, ECO:0000269|PubMed:21564353}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Constitutively expressed in healthy plants but repressed in response to infection by necrotrophic fungi (PubMed:15923348). Repressed by drought and abscisic acid (ABA) (PubMed:19175769). {ECO:0000269|PubMed:15923348, ECO:0000269|PubMed:19175769}. |
Publications
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- García-Andrade J,Ramírez V,López A,Vera P
Mediated plastid RNA editing in plant immunity. PLoS Pathog., 2013. 9(10): p. e1003713 [PMID:24204264] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Gamir J,Pastor V,Kaever A,Cerezo M,Flors V
Targeting novel chemical and constitutive primed metabolites against Plectosphaerella cucumerina. Plant J., 2014. 78(2): p. 227-40 [PMID:24506441]
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