PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10010615m

Common Name

CICLE_v10010615mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

HRT-like

Protein Properties

Length: 504aa MW: 55767.3 Da PI: 9.22

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10010615m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	58.4	1.2e-18	255	285	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv l+dGs+C+r+P kgRKRC +HKG Ri Ciclev10010615m 255 ICGVSLDDGSICRRPPLKGRKRCTQHKGLRI 285 8*****************************7 PP
2	HRT-like	58.1	1.5e-18	367	397	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv +dG++C+rqPvkgR RCeeHKGm+i Ciclev10010615m 367 ICGVESGDGTFCSRQPVKGRVRCEEHKGMKI 397 8****************************97 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000033	Biological Process	regulation of seed dormancy process
GO:0097100	Molecular Function	supercoiled DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 504 aa Download sequence Send to blast
CGGCSFEVAS IIKREECKRT KHDAHFSKWK ILVGASDWAD YLLGKEGADR YRVHNLPSTS 60 GPGVYELGIV ASRSRTDRID SDDVVVVYLG QADSVRTRLQ CYGRSGAHLN NNPSNGSGCF 120 DDIFSRRHAI AYRWAPMENK ADALNTESEL LSTFDYAWNK GSNGTRRHYD VLRKLNTIAS 180 DNIQFPQSIR KLLYFSQKPA GIKIKASKLP SKQNNCGTYA DEEGHSFFSQ IFKFTKSQPR 240 LVLERHVTDE DRTVICGVSL DDGSICRRPP LKGRKRCTQH KGLRISRSNP VKPPVIEEMC 300 TVSEEHKWRS TNGSNSNILG ASEYVRNVDF DANACNYSDS SEMSRSGRVQ PQVFSKRFTT 360 KPNSDTICGV ESGDGTFCSR QPVKGRVRCE EHKGMKIKGI KSKSAEEDKS NVYDAGSKLS 420 TFNEEDFCSA VCGAQTLNGS YCRRPVKGNT NCWQHSKQSS NKGSTNSPCK GWSSGGTSIC 480 GAPTHNGSYC KRTVKGGGSC WQH*

Sequence ? help Back to Top

Protein Sequence Length: 504 aa Download sequence Send to blast

CGGCSFEVAS IIKREECKRT KHDAHFSKWK ILVGASDWAD YLLGKEGADR YRVHNLPSTS  60
GPGVYELGIV ASRSRTDRID SDDVVVVYLG QADSVRTRLQ CYGRSGAHLN NNPSNGSGCF  120
DDIFSRRHAI AYRWAPMENK ADALNTESEL LSTFDYAWNK GSNGTRRHYD VLRKLNTIAS  180
DNIQFPQSIR KLLYFSQKPA GIKIKASKLP SKQNNCGTYA DEEGHSFFSQ IFKFTKSQPR  240
LVLERHVTDE DRTVICGVSL DDGSICRRPP LKGRKRCTQH KGLRISRSNP VKPPVIEEMC  300
TVSEEHKWRS TNGSNSNILG ASEYVRNVDF DANACNYSDS SEMSRSGRVQ PQVFSKRFTT  360
KPNSDTICGV ESGDGTFCSR QPVKGRVRCE EHKGMKIKGI KSKSAEEDKS NVYDAGSKLS  420
TFNEEDFCSA VCGAQTLNGS YCRRPVKGNT NCWQHSKQSS NKGSTNSPCK GWSSGGTSIC  480
GAPTHNGSYC KRTVKGGGSC WQH*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024033802.1	0.0	protein EFFECTOR OF TRANSCRIPTION 2
TrEMBL	V4UKC3	0.0	V4UKC3_9ROSI; Uncharacterized protein (Fragment)
STRING	XP_006451430.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2954	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	8e-91	effector of transcription2

Link Out ? help Back to Top
Phytozome	Ciclev10010615m
Entrez Gene	18055626