PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10008982m
Common NameCICLE_v10008968mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GATA
Protein Properties Length: 313aa    MW: 34787 Da    PI: 10.0619
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10008982mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.34.9e-19176209134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      Cs C+tt+TplWR+gp+g+k+LCnaCG+++rk +
  Ciclev10008982m 176 CSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKAR 209
                      *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577169.03E-13169211No hitNo description
PROSITE profilePS5011413.257170206IPR000679Zinc finger, GATA-type
SMARTSM004013.5E-18170221IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.0E-15174210IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.19E-13175205No hitNo description
PfamPF003208.0E-17176209IPR000679Zinc finger, GATA-type
PROSITE patternPS003440176201IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MTPVHLNPPH DSDPFQLAEE QKDDQHLHLL HSSSHNRAAS SSVSWTNFQD QRMIIMEESQ  60
QHDQKVDHSG SSNLQVFSSS SIQTKKMNNI TNNKLPIRKR EVGEGTTSEN GSSSSGKWMS  120
SKIRLMHKMI NSSSNSTATH ELAVKVTQKL QYHQLHDNSE VNSFNSSNSN NTMRACSDCN  180
TTTTPLWRSG PRGPKSLCNA CGIRQRKARR AMQAAAAVET GTIAATGGSP FAKIKLQIKD  240
KKPRTSHVSQ NKKQYRTLDP DPTHQYQSQR KLCFKDFAIA LSKNSALKQV FPQDVEEAAI  300
LLMELSCGFI HS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006450838.10.0putative GATA transcription factor 22 isoform X2
RefseqXP_006475926.10.0putative GATA transcription factor 22 isoform X2
TrEMBLA0A067GK430.0A0A067GK43_CITSI; Uncharacterized protein
TrEMBLV4TU860.0V4TU86_9ROSI; Uncharacterized protein
STRINGXP_006475925.10.0(Citrus sinensis)
STRINGXP_006450839.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.12e-15GATA family protein