PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10008922m | ||||||||
Common Name | CICLE_v10008922mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | GRF | ||||||||
Protein Properties | Length: 323aa MW: 36495.5 Da PI: 8.9966 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 78.4 | 7e-25 | 86 | 129 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk++e Ciclev10008922m 86 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 129 79***************************************987 PP | |||||||
2 | QLQ | 59 | 1.4e-20 | 15 | 49 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FTa+Q+q+L++Q+l++Ky++++ PvPp+Ll+ i+ Ciclev10008922m 15 PFTASQWQELEHQALIFKYMVSGIPVPPDLLFTIK 49 8******************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 4.2E-12 | 14 | 50 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 8.6E-16 | 15 | 48 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.585 | 15 | 50 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.719 | 86 | 130 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.1E-20 | 87 | 129 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MNNGNHNMSA INRFPFTASQ WQELEHQALI FKYMVSGIPV PPDLLFTIKR SYYFDRSPPS 60 AAKHFTHQHQ HVEWNCFQVG LGRKIDPEPG RCRRTDGKKW RCSKEAYPDS KYCERHMHRG 120 KNRSRKPVEL NTSTCTANKS SSALFYSSAK HQESFNLTHL VLDSGSGSGS GSQSNTDLRS 180 RYVYGPKEEV DEHAFFSEPS GKVRSFSAVS MDDSWQLTPL TMSSSCSSSS SKQRSFSGLQ 240 SDYSDLQLKS CADNKPKQQD KQPEEIPQKT VHRFFDEWPP KSRDSWLDLD DKSSKNASLS 300 TTSLSISIPS SHDFPIFSSR AP* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC182662 | 8e-50 | AC182662.2 Populus trichocarpa clone Pop1-15O24, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006451560.1 | 0.0 | growth-regulating factor 6 isoform X1 | ||||
Refseq | XP_006490822.1 | 0.0 | growth-regulating factor 6 isoform X1 | ||||
TrEMBL | V4UKN2 | 0.0 | V4UKN2_9ROSI; Uncharacterized protein | ||||
STRING | XP_006490822.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006451560.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4567 | 26 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 4e-53 | growth-regulating factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10008922m |
Entrez Gene | 18053770 |