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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10008834m | ||||||||
Common Name | CICLE_v10008821mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | HB-other | ||||||||
Protein Properties | Length: 343aa MW: 38951.3 Da PI: 5.9081 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 21.9 | 3e-07 | 281 | 312 | 23 | 54 |
SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 23 rypsaeereeLAkklgLterqVkvWFqNrRak 54 +yp++e++++L +++gL+ +q+ +WF N+R + Ciclev10008834m 281 PYPTEEDKARLVQETGLQLKQINNWFINQRKR 312 8*****************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 2.8E-16 | 71 | 115 | IPR005540 | KNOX1 |
Pfam | PF03790 | 4.6E-17 | 73 | 112 | IPR005540 | KNOX1 |
SMART | SM01256 | 1.7E-25 | 124 | 179 | IPR005541 | KNOX2 |
Pfam | PF03791 | 9.3E-19 | 129 | 178 | IPR005541 | KNOX2 |
PROSITE profile | PS50071 | 11.321 | 253 | 316 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.4E-10 | 255 | 320 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.27E-16 | 255 | 319 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.02E-10 | 256 | 315 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-24 | 260 | 317 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.8E-18 | 273 | 312 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MAYNDQQNMQ RLVLPTTSTN PPPPTWLNNA VRHHHHQNND DDDDDEEEAP KNNKNNSASN 60 DNGRAEDWET VKCKAEIVGH PLYEQLLSAH VSCLRIATPV DQLPKIDAQL SRSRDVLAKY 120 SAVANGRVLD DKELDQFMTH YVLLLYSFKE QLQQHVRVHA MEAVMACWDL EQSLQSLTGV 180 SPGEGTGATM SDDDEDQVDS DTNFFDGSLD GPDSMGFGPL VPTESERSLM ERVRHELKHE 240 LKQEKIVDIR EEILRKRRAG KLPGDTTSLL KAWWLSHAKW PYPTEEDKAR LVQETGLQLK 300 QINNWFINQR KRNWHANPSS STASKSKRKR SNAGKSSNEN FM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x2n_A | 1e-12 | 256 | 321 | 8 | 73 | Homeobox protein PKNOX1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 309 | 329 | RKRNWHANPSSSTASKSKRKR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ccl.9869 | 0.0 | root |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006453704.1 | 0.0 | homeobox protein knotted-1-like LET12 isoform X1 | ||||
Swissprot | P48000 | 1e-159 | KNAT3_ARATH; Homeobox protein knotted-1-like 3 | ||||
Swissprot | P48001 | 1e-160 | KNAT4_ARATH; Homeobox protein knotted-1-like 4 | ||||
TrEMBL | V4U271 | 0.0 | V4U271_9ROSI; Uncharacterized protein | ||||
STRING | XP_006453706.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25220.1 | 1e-146 | KNOTTED1-like homeobox gene 3 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10008834m |
Entrez Gene | 18054653 |
Publications ? help Back to Top | |||
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