PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10008684m
Common NameCICLE_v10008684mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 374aa    MW: 40648.3 Da    PI: 7.8346
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10008684mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.10.000752332691455
                      HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  Ciclev10008684m 233 EKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 269
                      56778888899999887.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.417219268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.70E-5231273No hitNo description
SuperFamilySSF474591.83E-9231279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-7233275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MNRGILQSSP VQQMMAGNPN WWNINSMRPP TPQASPFLPP PANNLFPQYP SCYDNQEQLP  60
ESWSQLLLGR MVDEEDKSGM VGHFQTKKVE NWEEQILHHS SSSANSVVNV KQEINPAANS  120
YFYGHANDDH FQAAAASAAT KTTSWSQVMP PAAAASSPNN KSCVTSFSSN MLDFTSTKAD  180
ARHPPPDRSS ECNSTASGGV AKKARVQSSS SSSTQSTFKT RTQAQTFVMV RKEKLGDRIT  240
ALHQLVSPFG KTDTASVLLE AIGYIRFLQS QIEALSLPYL GSSGSAAMRQ QQHSQHPVQG  300
ERNCIFPEDP GQLLNDNCMK RKGTSDHQES QEEVKKSLRS RGLCLVPVSC TLQVGSDNGA  360
DYWAPALGGG GLR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.34920.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006451209.10.0transcription factor bHLH68 isoform X1
RefseqXP_006475662.10.0transcription factor bHLH68 isoform X1
SwissprotQ8S3D11e-105BH068_ARATH; Transcription factor bHLH68
TrEMBLV4UJM80.0V4UJM8_9ROSI; Uncharacterized protein
STRINGXP_006451210.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18722851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.14e-94bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]