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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Ciclev10008640m |
| Common Name | CICLE_v10008640mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
| Family |
HB-other |
| Protein Properties |
Length: 382aa MW: 41496.8 Da PI: 7.9017 |
| Description |
HB-other family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Ciclev10008640m | genome | ICGC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 21.6 | 3.8e-07 | 13 | 74 | 6 | 55 |
S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
Homeobox 6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
+f++ +++e+e ++ n ps+e LA+k ++ +qV +WFqNrR+
Ciclev10008640m 13 RFNPAEVTEMEGILQEhhNAMPSREILVALAEKFsesperkgkiMVQMKQVWNWFQNRRYAI 74
588888999999999766888*********************999**************865 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 382 aa
Download sequence Send
to blast |
MGRPPSNGGP AFRFNPAEVT EMEGILQEHH NAMPSREILV ALAEKFSESP ERKGKIMVQM 60
KQVWNWFQNR RYAIRAKSIK SPGKLNVTPL ARDDSTPGRN VPQPVAAPIP IPMSASVPPT 120
MPASANVPSV STAGRAASES TFMEFEAKSA RDGAWYDVSA FLAQRNFDTA DPEVQVRFAG 180
FGAEEDEWVN IKRHVRQRSL PCEASECVAV LPGDLILCFQ EGKDQALYFD AHVLDAQRRR 240
HDVRGCRCRF LVRYDHDQSE EIVPLRKVCR RPETDYRLQQ LHAMNDSVMV DHQKTSADLS 300
ASTATRVTVS SAEMMHKQVN ANIAQGAPLS HSFVSVPAQT VEPKNASASS GISSSNPAVP 360
PGGAAVISGT AATTAATGHP S*
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4iuq_A | 3e-47 | 143 | 273 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuq_B | 3e-47 | 143 | 273 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iur_A | 3e-47 | 143 | 273 | 4 | 134 | SHH1 SAWADEE |
| 4iur_B | 3e-47 | 143 | 273 | 4 | 134 | SHH1 SAWADEE |
| 4iut_A | 3e-47 | 143 | 273 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iut_B | 3e-47 | 143 | 273 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuu_A | 3e-47 | 143 | 273 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuu_B | 3e-47 | 143 | 273 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuv_A | 3e-47 | 143 | 273 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuv_B | 3e-47 | 143 | 273 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | May play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT3G18380.1 | 1e-136 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |
