PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10008366m
Common NameCICLE_v10008366mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family CO-like
Protein Properties Length: 430aa    MW: 47071.1 Da    PI: 7.7979
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10008366mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.59.8e-0775111437
         zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 
                      + C++++   +  fC+ ++ +lC +C l +H +    H
  Ciclev10008366m  75 KPCDTCKAAAAAVFCRVDSAFLCLNCDLRIH-NcmnkH 111
                      68******99*********************.435556 PP
2zf-B_box25.82.2e-08114159342
         zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                       ++C+ +e+ ++   C+ +   lC +C   +H+       H++ p+
  Ciclev10008366m 114 VWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSAnplarrHERLPI 159
                      689*****************************66888888998876 PP
3CCT68.91.3e-23354398145
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 
                      Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k+ae
  Ciclev10008366m 354 REARVLRYREKRKNRKFEKTIRYHSRKAYAETRPRIKGRFAKRAE 398
                      9*****************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.3172116IPR000315B-box-type zinc finger
SMARTSM003367.2E-872116IPR000315B-box-type zinc finger
CDDcd000219.99E-876116No hitNo description
PROSITE profilePS5011910.68112159IPR000315B-box-type zinc finger
PfamPF006431.3E-6114159IPR000315B-box-type zinc finger
CDDcd000213.79E-8115159No hitNo description
SMARTSM003362.7E-10117159IPR000315B-box-type zinc finger
PROSITE profilePS5101716.559354396IPR010402CCT domain
PfamPF062031.1E-17354396IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MASNHPRVQL LLVIREQNPK IKNQTSQKLV FAFLHVYSGD QNSKKERKRL YLVMPMGIEL  60
HSVKVISGGW SVAAKPCDTC KAAAAAVFCR VDSAFLCLNC DLRIHNCMNK HARVWMCEVC  120
EQAPAAVTCK ADAAALCVTC DNDIHSANPL ARRHERLPIE PFFDSADSIV KSSAFNFLVP  180
SDQNGGSEFT GASEHDGVDS ASWLIPNSKP GIENAGEMKS GDMFFIDPFI DLNDFDYPNS  240
FQNHHSAGMD SVVPVQTTKP EPIPAQAAAP IPLINNENCF DIDFCRSKLS SFNYQSQSVS  300
SSSLDVGVVP DGNSMSDISY TFGRNMSTGS GADPSVTVSA PGANQASQLC GIDREARVLR  360
YREKRKNRKF EKTIRYHSRK AYAETRPRIK GRFAKRAEAD SEVDRLYKSA ASAAGAYLAD  420
SQYGVVPSF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.27000.0flower
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006474138.10.0zinc finger protein CONSTANS-LIKE 5
RefseqXP_024033868.10.0zinc finger protein CONSTANS-LIKE 5
SwissprotQ9FHH81e-122COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBLV4U1K50.0V4U1K5_9ROSI; Uncharacterized protein
STRINGXP_006453443.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78992435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.11e-115CONSTANS-like 5
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]