PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10007648m
Common NameCICLE_v10007648mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ARR-B
Protein Properties Length: 682aa    MW: 74487.1 Da    PI: 5.5944
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10007648mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like93.12.2e-29212265155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      kpr++WtpeLH++Fv av+qL G +kA+Pk+il+lm+v+gLt+e+v+SHLQk+Rl
  Ciclev10007648m 212 KPRVVWTPELHRKFVGAVNQL-GVDKAVPKKILDLMNVEGLTRENVASHLQKFRL 265
                      79*******************.********************************8 PP
2Response_reg78.22.9e-26261341109
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                      vl vdD+p+ +++l+++l+  +y ev+++ ++  al+ll+e++  +Dl++ D+ mp+mdG++ll++   e  +lp+i+++a+g+ +++ + +  
  Ciclev10007648m  26 VLAVDDDPTCLKVLENFLRACQY-EVTVTNQAVTALKLLRENRnnFDLVISDVHMPDMDGFKLLEHVGLEM-DLPVIMLSAYGDTKLVMKGITH 117
                      799********************.***************999889**********************6644.8********************* PP

                      TESEEEESS--HHHHHH CS
     Response_reg  93 GakdflsKpfdpeelvk 109
                      Ga d+l Kp+ +eel +
  Ciclev10007648m 118 GACDYLLKPVRIEELKN 134
                      **************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363929.9E-1661680IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23005.2E-4323158No hitNo description
SuperFamilySSF521722.42E-3623146IPR011006CheY-like superfamily
SMARTSM004482.0E-3324136IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.78925140IPR001789Signal transduction response regulator, receiver domain
PfamPF000726.2E-2426134IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.97E-2827140No hitNo description
Gene3DG3DSA:1.10.10.606.9E-31209270IPR009057Homeodomain-like
PROSITE profilePS5129412.457209268IPR017930Myb domain
SuperFamilySSF466891.04E-20209269IPR009057Homeodomain-like
TIGRFAMsTIGR015573.8E-25212265IPR006447Myb domain, plants
PfamPF002493.3E-7214263IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MTAEERMGSA GCEDGPIDKF PIGMRVLAVD DDPTCLKVLE NFLRACQYEV TVTNQAVTAL  60
KLLRENRNNF DLVISDVHMP DMDGFKLLEH VGLEMDLPVI MLSAYGDTKL VMKGITHGAC  120
DYLLKPVRIE ELKNIWQHVI RRKKVGPKDQ NKSLNQENSR VGAGEGGQGA MSTGNSDQNG  180
KSNRKRKDQD GDEDEDGDDD GQENEDSTTQ KKPRVVWTPE LHRKFVGAVN QLGVDKAVPK  240
KILDLMNVEG LTRENVASHL QKFRLYLKRL SNETPQAGMV AALGSKDSSY LRIGALDGFG  300
DLRSLNSPGR LSSSAISSSY VPGNMFGRLN STSGLSMHGI ASSGMIQPGH SQSFNTSFNT  360
IGKIQQAMFP ANRISNLFQG VRTSSELNQL PQSKSTTQIG DFNHINSPTT SMAATGFTDA  420
TVAVGSSSSS VSTSSSNIMM LQGNLHQAHS RDAYGNQSSL SVASLNQESF DVGVRNSSNF  480
LDHSRCNESW QDAVQLSSNS LPLSEPFIHD QMPPNLRNTL SSTSCLDISS SMATSTHLED  540
SRGDLSCQPG LIGNVIQNYT SKQQWLEHKQ GYNQNLNNPF SNVNTLLSGN CTMGPFSQSM  600
DQSNSPYIAQ LTGVEKAPLN TKLRSNDDFL LEQSKSHDGF IQNHYDPMDD MMSGILKRDS  660
NETILMDGEL GFDAYSLSSC M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A8e-27208271164ARR10-B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006453634.10.0two-component response regulator ORR24
TrEMBLV4WJC40.0V4WJC4_9ROSI; Two-component response regulator
STRINGXP_006453634.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19812879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-117response regulator 12