PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10006869m
Common NameCICLE_v10006869mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 220aa    MW: 25390.7 Da    PI: 9.8843
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10006869mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM92.19.1e-2991471128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppG+rF Ptdee+v +yL +kv+g++++++ vi+++d+y+ e   ++   +++e+ +yfF++ +kk+++g + +r t+ g+W+++ +++   +
  Ciclev10006869m   9 LPPGYRFAPTDEEIVAHYLYNKVHGRPVSTSAVIDNIDVYRDENVWIRIFERTGENALYFFTTLKKKTENGVQVERETNCGTWRSQKNTRIYRH 102
                      79****************************999***********99985445688899**************************9988776666 PP

              NAM  95 k.........kgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                      +         k++++g ++ +++   +g++    k +Wvmheyrl
  Ciclev10006869m 103 RynktgdkiiKKQHIGSRRNFTYVpkEGSRGGVIKGTWVMHEYRL 147
                      68888888887788**********5445555556*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-315171IPR003441NAC domain
PROSITE profilePS5100532.3989171IPR003441NAC domain
PfamPF023652.1E-2010147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MERHQLPALP PGYRFAPTDE EIVAHYLYNK VHGRPVSTSA VIDNIDVYRD ENVWIRIFER  60
TGENALYFFT TLKKKTENGV QVERETNCGT WRSQKNTRIY RHRYNKTGDK IIKKQHIGSR  120
RNFTYVPKEG SRGGVIKGTW VMHEYRLDGI SISNARINNI GDYVICRIKK KQPKREELMS  180
GDNDGPVRNS MSGLVQPPPS NNTSECFYFH CYLTTSVNN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-19817216166NO APICAL MERISTEM PROTEIN
1ut4_B2e-19817216166NO APICAL MERISTEM PROTEIN
1ut7_A2e-19817216166NO APICAL MERISTEM PROTEIN
1ut7_B2e-19817216166NO APICAL MERISTEM PROTEIN
4dul_A2e-19817216166NAC domain-containing protein 19
4dul_B2e-19817216166NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006475540.11e-153NAC domain-containing protein 2-like
RefseqXP_024044707.11e-153NAC domain-containing protein 2
TrEMBLV4S5251e-163V4S525_9ROSI; Uncharacterized protein
STRINGXP_006422232.11e-164(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2006036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.14e-25NAC family protein