PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10006743m
Common NameCICLE_v10006743mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 80aa    MW: 8872.27 Da    PI: 10.1423
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10006743mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.93.4e-15250149
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     k+ienk  r +tfskR  gi KKA+ L +L   ++a+++fs++gk y +
  Ciclev10006743m  2 KKIENKYDRMITFSKRISGIYKKASKLVTLPRGDIAIVVFSPSGKPYSF 50
                     78*******************************************8887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554553.79E-18169IPR002100Transcription factor, MADS-box
SMARTSM004328.4E-11153IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.53154IPR002100Transcription factor, MADS-box
PfamPF003198.4E-18350IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-51631IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-53152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    Send to blast
MKKIENKYDR MITFSKRISG IYKKASKLVT LPRGDIAIVV FSPSGKPYSF GHPSIEAVAN  60
HFLGLDQPPN DNNHPLFEV*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the embryo at the globular stage and in endosperm nuclei and chalazal endosperm of developing seeds. {ECO:0000269|PubMed:16899218}.
UniprotTISSUE SPECIFICITY: Expressed in roots, leaves and shoot apices. {ECO:0000269|PubMed:16899218}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function as a floral promoter operating upstream of known floral activators in the autonomous pathway. {ECO:0000269|PubMed:16899218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024043348.12e-35agamous-like MADS-box protein AGL61
SwissprotQ9LMM81e-16AGL28_ARATH; Agamous-like MADS-box protein AGL28
TrEMBLA0A2H5QMZ24e-51A0A2H5QMZ2_CITUN; Uncharacterized protein
TrEMBLV4S6V04e-51V4S6V0_9ROSI; Uncharacterized protein
STRINGXP_006421355.17e-52(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.12e-19AGAMOUS-like 29
Publications ? help Back to Top
  1. Cheng JZ,Zhou YP,Lv TX,Xie CP,Tian CE
    Research progress on the autonomous flowering time pathway in Arabidopsis.
    Physiol Mol Biol Plants, 2017. 23(3): p. 477-485
    [PMID:28878488]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]