PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

ERF

Protein Properties

Length: 217aa MW: 24605 Da PI: 8.4701

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10005863m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	56.2	8.5e-18	126	176	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp k r++lg+f++ +Aaka++ a+ +++g Ciclev10005863m 126 HYRGVRRRP-WGKYAAEIRDP---ArKGSRVWLGTFDSDVDAAKAYDSAAFRMRG 176 8******.******8...4445******99***********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	4.1E-31	125	185	IPR001471	AP2/ERF domain
CDD	cd00018	2.33E-30	125	184	No hit	No description
SMART	SM00380	1.3E-35	126	190	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	5.62E-22	126	185	IPR016177	DNA-binding domain
Pfam	PF00847	2.1E-12	126	176	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	24.223	126	184	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.4E-13	127	138	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.4E-13	166	186	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009409	Biological Process	response to cold
GO:0009414	Biological Process	response to water deprivation
GO:0009723	Biological Process	response to ethylene
GO:0009737	Biological Process	response to abscisic acid
GO:1902074	Biological Process	response to salt
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MSHKNPSPCP VLLLYKLTQL TRSLHFSSIL INMSNMTTLE EESSILEFIR QFLLGDFTSL 60 DDPNLSFLQP MESEFPVIKS EPDSPTFCEI IKPEPLDITC LGSSNWTESP QKRSEPKLAD 120 TEERKHYRGV RRRPWGKYAA EIRDPARKGS RVWLGTFDSD VDAAKAYDSA AFRMRGRKAI 180 LNFPLEAGAD SPPAKNSRKR RREKTLDLQE STISII*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	1e-29	125	189	4	68	ATERF1
3gcc_A	1e-29	125	189	4	68	ATERF1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	197	201	RKRRR
2	197	203	RKRRREK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ccl.19597	0.0	abscission zone\| vegetative tissue

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM906074	6e-65	AM906074.1 Citrus medica mRNA for ethylene-responsive element binding protein (erebp gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006421533.1	1e-159	ethylene-responsive transcription factor ERF107
Swissprot	Q9LY05	3e-41	EF106_ARATH; Ethylene-responsive transcription factor ERF106
TrEMBL	A0A2H5Q6K2	1e-157	A0A2H5Q6K2_CITUN; Uncharacterized protein
TrEMBL	V4RKU4	1e-157	V4RKU4_9ROSI; Uncharacterized protein
STRING	XP_006421533.1	1e-158	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3229	27	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G07580.1	6e-44	ERF family protein

Link Out ? help Back to Top
Phytozome	Ciclev10005863m
Entrez Gene	18031603

Publications ? help Back to Top
Kim H,Go YS,Suh MC DEWAX2 Transcription Factor Negatively Regulates Cuticular Wax Biosynthesis in Arabidopsis Leaves. Plant Cell Physiol., 2018. 59(5): p. 966-977 [PMID:29425344]