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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10005750m | ||||||||
Common Name | CICLE_v10005750mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | ERF | ||||||||
Protein Properties | Length: 240aa MW: 27002.3 Da PI: 6.3695 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.4 | 4.8e-20 | 99 | 149 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + k +r++lg+f ta eAaka+++a+ k++g Ciclev10005750m 99 HYRGVRRRP-WGKYAAEIRDP---NkKGTRVWLGTFNTAVEAAKAYDNAAFKMRG 149 7********.**********9...4345*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 7.6E-33 | 98 | 158 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.381 | 99 | 157 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-37 | 99 | 163 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.68E-23 | 99 | 159 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 7.2E-14 | 99 | 149 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.78E-32 | 99 | 157 | No hit | No description |
PRINTS | PR00367 | 1.6E-10 | 100 | 111 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-10 | 123 | 139 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MAAGHHYHQD HEALTLERIS QYLLNDLTPM DSYSFISNLP QQNPASTDEE ILVQKTSSTL 60 SQRKPSSINV RIPPPTTSIF KLKDEDKDFE VTDDYKERHY RGVRRRPWGK YAAEIRDPNK 120 KGTRVWLGTF NTAVEAAKAY DNAAFKMRGR KAILNFPLEI GEISLDSDEV QQVDCGKKRK 180 YEENEEFERK VTVKKEETVS GGVGLGPLTP SSWTGFWDDG NGIFSVPPLS PCFGQLGVC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-29 | 98 | 160 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 3e-29 | 96 | 160 | 2 | 66 | ATERF1 |
3gcc_A | 3e-29 | 96 | 160 | 2 | 66 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00556 | DAP | Transfer from AT5G51190 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006421525.1 | 0.0 | ethylene-responsive transcription factor ERF105 | ||||
TrEMBL | V4S7G6 | 1e-180 | V4S7G6_9ROSI; Uncharacterized protein | ||||
STRING | XP_006421525.1 | 1e-180 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7893 | 26 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51190.1 | 3e-61 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10005750m |
Entrez Gene | 18031356 |