PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10005750m
Common NameCICLE_v10005750mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 240aa    MW: 27002.3 Da    PI: 6.3695
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10005750mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.44.8e-2099149255
              AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+++AeIrdp   + k +r++lg+f ta eAaka+++a+ k++g
  Ciclev10005750m  99 HYRGVRRRP-WGKYAAEIRDP---NkKGTRVWLGTFNTAVEAAKAYDNAAFKMRG 149
                      7********.**********9...4345*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.6E-3398158IPR001471AP2/ERF domain
PROSITE profilePS5103224.38199157IPR001471AP2/ERF domain
SMARTSM003801.3E-3799163IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-2399159IPR016177DNA-binding domain
PfamPF008477.2E-1499149IPR001471AP2/ERF domain
CDDcd000182.78E-3299157No hitNo description
PRINTSPR003671.6E-10100111IPR001471AP2/ERF domain
PRINTSPR003671.6E-10123139IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MAAGHHYHQD HEALTLERIS QYLLNDLTPM DSYSFISNLP QQNPASTDEE ILVQKTSSTL  60
SQRKPSSINV RIPPPTTSIF KLKDEDKDFE VTDDYKERHY RGVRRRPWGK YAAEIRDPNK  120
KGTRVWLGTF NTAVEAAKAY DNAAFKMRGR KAILNFPLEI GEISLDSDEV QQVDCGKKRK  180
YEENEEFERK VTVKKEETVS GGVGLGPLTP SSWTGFWDDG NGIFSVPPLS PCFGQLGVC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-2998160163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-2996160266ATERF1
3gcc_A3e-2996160266ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00556DAPTransfer from AT5G51190Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006421525.10.0ethylene-responsive transcription factor ERF105
TrEMBLV4S7G61e-180V4S7G6_9ROSI; Uncharacterized protein
STRINGXP_006421525.11e-180(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78932641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.13e-61ERF family protein