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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Ciclev10005676m |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family |
C3H |
Protein Properties |
Length: 259aa MW: 28065.1 Da PI: 8.7313 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Ciclev10005676m | genome | ICGC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 27.7 | 4.7e-09 | 2 | 22 | 7 | 27 |
SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 7 rffartGtCkyGdrCkFaHgp 27
++f++t Ck+G++CkF+H++
Ciclev10005676m 2 QYFLKTQRCKFGSKCKFNHPK 22
59*****************96 PP
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2 | zf-CCCH | 38.1 | 2.6e-12 | 45 | 69 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27
+++C f++++GtCk+G++CkF H++
Ciclev10005676m 45 EPPCAFYLKNGTCKFGATCKFDHPK 69
79*********************96 PP
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3 | zf-CCCH | 37.8 | 3.3e-12 | 127 | 149 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27
C+f+++tG CkyG++C+++H++
Ciclev10005676m 127 DCPFYLKTGSCKYGSTCRYNHPE 149
7********************96 PP
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4 | zf-CCCH | 39.8 | 7.7e-13 | 211 | 232 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26
+C+++++tG Ck+G++CkF+H+
Ciclev10005676m 211 ECDYYMKTGVCKFGEKCKFHHP 232
7********************8 PP
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Protein Features
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
PROSITE profile | PS50103 | 11.066 | 1 | 23 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-6 | 2 | 22 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.3 | 2 | 22 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.3E-4 | 3 | 22 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.995 | 42 | 70 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.2E-6 | 42 | 69 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.7E-10 | 45 | 69 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.5E-6 | 45 | 70 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.3E-5 | 47 | 68 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.018 | 122 | 150 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.0E-5 | 122 | 149 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.6E-10 | 127 | 149 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.63E-6 | 127 | 150 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.5E-5 | 128 | 149 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.028 | 206 | 234 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.8E-6 | 206 | 233 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.79E-7 | 208 | 234 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.6E-10 | 211 | 232 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.5E-6 | 212 | 232 | IPR000571 | Zinc finger, CCCH-type |
Sequence ? help Back to Top |
Protein Sequence Length: 259 aa
Download sequence Send
to blast |
MQYFLKTQRC KFGSKCKFNH PKDKLIGSSD SGNGDVSALP ERPSEPPCAF YLKNGTCKFG 60 ATCKFDHPKD FQLPSVGQEN GIGEQNESVI KTDETTGLLN PGMSLFSHAP AMLHNSKGLP 120 IRPGELDCPF YLKTGSCKYG STCRYNHPER TAINPPAAAI VHPLITSPAA SLGISVVSPA 180 ASLYQTIDPR LAQATLGVSP SLYPQRPGQM ECDYYMKTGV CKFGEKCKFH HPIDRSAAKT 240 PSQETVKLTL AGLPRREV*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Highly expressed in inflorescences, at intermediate levels in leaves and stems and at lower levels in roots. {ECO:0000269|PubMed:11595801}. |
Functional Description ? help
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Source |
Description |
UniProt | Involved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}. |