PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10005549m
Common NameCICLE_v10005549mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 294aa    MW: 32639.5 Da    PI: 6.7248
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10005549mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.83.6e-202878155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ++y+GVr++  +g+WvAeIr+p++   r+r +lg+f taeeAa a+++a+++l+g
  Ciclev10005549m 28 CQYRGVRQRT-WGKWVAEIREPKK---RTRLWLGSFATAEEAAMAYDEAARRLYG 78
                     68*****999.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.05E-312888No hitNo description
PfamPF008471.9E-132878IPR001471AP2/ERF domain
SMARTSM003801.3E-372992IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-212987IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.9E-312987IPR001471AP2/ERF domain
PROSITE profilePS5103222.8272986IPR001471AP2/ERF domain
PRINTSPR003672.3E-103041IPR001471AP2/ERF domain
PRINTSPR003672.3E-105268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MESYKKSPLK PWKKGPTRGK GGPLNASCQY RGVRQRTWGK WVAEIREPKK RTRLWLGSFA  60
TAEEAAMAYD EAARRLYGPD AYLNLPHLHT DNNNPSSNNK SHNKFKWVPS KNFISMFPSC  120
GLLNVNAQPS VHVIHQRLEE LKKNGVFNQT SSSSSSSGES KVEAPTTCIG DKTLLEAVSV  180
REKEVEISSG NMLGWREEKK QIDLNEFLQQ LGILKEESQA EVTEGTEGSS GAAESESSMK  240
DYGELAAFAD TSFNWDALIE MHGNGIAGHH QLGGFQLYDV QEEVTLPTSI WNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-182986260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00411DAPTransfer from AT3G57600Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006421446.10.0dehydration-responsive element-binding protein 2F
SwissprotQ9SVX52e-92DRE2F_ARATH; Dehydration-responsive element-binding protein 2F
TrEMBLA0A2H5Q8Z50.0A0A2H5Q8Z5_CITUN; Uncharacterized protein
TrEMBLV4SCL80.0V4SCL8_9ROSI; Uncharacterized protein
STRINGXP_006421446.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81682638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.12e-73ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]