PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10005455m
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 320aa    MW: 34368.2 Da    PI: 8.0811
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10005455mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.36.2e-09222727
                     SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  7 rffartGtCkyGdrCkFaHgp 27
                     ++f++t  Ck+G++CkF+H++
  Ciclev10005455m  2 QYFLKTQRCKFGSKCKFNHPK 22
                     59*****************96 PP
2zf-CCCH37.73.4e-124569327
                     S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                     +++C f++++GtCk+G++CkF H++
  Ciclev10005455m 45 EPPCAFYLKNGTCKFGATCKFDHPK 69
                     79*********************96 PP
3zf-CCCH37.44.3e-12127149527
                      --SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                       C+f+++tG CkyG++C+++H++
  Ciclev10005455m 127 DCPFYLKTGSCKYGSTCRYNHPE 149
                      7********************96 PP
4zf-CCCH39.41e-12211232526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C+++++tG Ck+G++CkF+H+
  Ciclev10005455m 211 ECDYYMKTGVCKFGEKCKFHHP 232
                      7********************8 PP
5zf-CCCH40.54.5e-13262283627
                      -SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                      C+++++tGtCkyG++CkF H+p
  Ciclev10005455m 262 CPYYMKTGTCKYGATCKFDHPP 283
                      ********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.066123IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-6222IPR000571Zinc finger, CCCH-type
SMARTSM003568.3222IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-4322IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-64269IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.9954270IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-94569IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-54570IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.6E-54768IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.018122150IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-5122149IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-6127150IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-9127149IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-5128149IPR000571Zinc finger, CCCH-type
SMARTSM003565.8E-6206233IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.028206234IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-7209234IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-10211232IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.9E-6212232IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-6256283IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.666256284IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-6260283IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-6262281IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-10262283IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MQYFLKTQRC KFGSKCKFNH PKDKLIGSSD SGNGDVSALP ERPSEPPCAF YLKNGTCKFG  60
ATCKFDHPKD FQLPSVGQEN GIGEQNESVI KTDETTGLLN PGMSLFSHAP AMLHNSKGLP  120
IRPGELDCPF YLKTGSCKYG STCRYNHPER TAINPPAAAI VHPLITSPAA SLGISVVSPA  180
ASLYQTIDPR LAQATLGVSP SLYPQRPGQM ECDYYMKTGV CKFGEKCKFH HPIDRSAAKT  240
PSQETVKLTL AGLPRREGAV HCPYYMKTGT CKYGATCKFD HPPPGEVMAI SALDGTSTAV  300
GEEVKGDEKE SEVAPSTAV*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in inflorescences, at intermediate levels in leaves and stems and at lower levels in roots. {ECO:0000269|PubMed:11595801}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006422325.20.0zinc finger CCCH domain-containing protein 37 isoform X1
RefseqXP_006493722.10.0zinc finger CCCH domain-containing protein 37 isoform X1
RefseqXP_006493723.10.0zinc finger CCCH domain-containing protein 37 isoform X2
RefseqXP_024047902.10.0zinc finger CCCH domain-containing protein 37 isoform X2
SwissprotQ941Q31e-125C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A067F2C40.0A0A067F2C4_CITSI; Uncharacterized protein
TrEMBLA0A2H5NQS50.0A0A2H5NQS5_CITUN; Uncharacterized protein
STRINGXP_006493722.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-127floral homeotic protein (HUA1)