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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Ciclev10004471m |
Common Name | CICLE_v10004470mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family |
ARR-B |
Protein Properties |
Length: 680aa MW: 73829.8 Da PI: 6.088 |
Description |
ARR-B family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Ciclev10004471m | genome | ICGC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | G2-like | 91.7 | 6.1e-29 | 207 | 260 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
Ciclev10004471m 207 KPRVVWSVELHQQFVSAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 260
79*******************.********************************8 PP
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2 | Response_reg | 74.6 | 3.9e-25 | 29 | 137 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92
vl+vdD+p+ +++l+++l y ev+ + +e al++l++++ +D+++ D+ mp+mdG++ll++ e +lp+i+++a ++++ + + +
Ciclev10004471m 29 VLVVDDDPTCLRILEKMLGTCLY-EVTKCNRAEIALDMLRTNKngYDIVISDVHMPDMDGFKLLEQVGLEM-DLPVIMMSADDSKQVVMKGVTH 120
89*********************.***************998889**********************6644.8********************* PP
TESEEEESS--HHHHHH CS
Response_reg 93 GakdflsKpfdpeelvk 109
Ga d+l Kp+ +e+l +
Ciclev10004471m 121 GACDYLIKPVRIEALKN 137
*************9986 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009873 | Biological Process | ethylene-activated signaling pathway |
GO:0010082 | Biological Process | regulation of root meristem growth |
GO:0010119 | Biological Process | regulation of stomatal movement |
GO:0010150 | Biological Process | leaf senescence |
GO:0071368 | Biological Process | cellular response to cytokinin stimulus |
GO:0080113 | Biological Process | regulation of seed growth |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 680 aa
Download sequence Send
to blast |
MNLNNDKGSM STASSSVTVS DQFPAGLRVL VVDDDPTCLR ILEKMLGTCL YEVTKCNRAE 60 IALDMLRTNK NGYDIVISDV HMPDMDGFKL LEQVGLEMDL PVIMMSADDS KQVVMKGVTH 120 GACDYLIKPV RIEALKNIWQ HVVRKRKNEW KDLEQSGSVE EGDRQPKPSE EADYSSSANE 180 GNWRTSKRRK DEEEEMEERD DTSTLKKPRV VWSVELHQQF VSAVNQLGID KAVPKKILEL 240 MNVPGLTREN VASHLQKYRL YLRRLSGVSP HQGNSFISSH SQEPPYGSLS SLSGLDFQTL 300 AATGQIPAQS LATLQAAGLA RSAAKPGLPM PLVDQRNIFS FDNQKLRFGE GQPQHMSSGK 360 QMNLLHGIPT TMDSKQLVNL HHSAQSLGSL NMQASAHGNP SGQSSPLLMQ MAQPQSRGQI 420 LTETSGGQVP RLPTSVGHPI LSNGAAGAML ARNGIGENSR GTGYNSVSQT SSVLNFPLNH 480 SAELPGNSFP LGSTPGISAG MSTLTTKGGF QEEINSDIKG SGGFMPSYDI FNDLQQHKPH 540 NWELQNVGFA FDASQHSNSL QASVDVTPSV LVNQGYSSSP RNVQNSNVSA MGKPIFSVGE 600 GSEHGNALNV GQHLNSLLVD NSTRVKSERV TDTSCQPTLL PQHFGQEDLM SAILKQQDGL 660 GPAENDFEFD GYSLDNIPV*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Detected in the whole plant. Predominantly expressed in pollen. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:15173562, ECO:0000269|PubMed:9891419}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}. |
Publications
? help Back to Top |
- Takahashi N, et al.
Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots. Curr. Biol., 2013. 23(18): p. 1812-7 [PMID:24035544] - Ge XM, et al.
Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis. Plant J., 2015. 82(1): p. 138-50 [PMID:25704455] - Takahashi N,Umeda M
Cytokinins promote onset of endoreplication by controlling cell cycle machinery. Plant Signal Behav, 2014. 9(8): p. e29396 [PMID:25763620] - Kobayashi K, et al.
Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling. Plant Physiol., 2017. 173(4): p. 2340-2355 [PMID:28193764] - Arnaud D, et al.
Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis. Plant Cell, 2017. 29(3): p. 543-559 [PMID:28254779] - Zhang TQ, et al.
A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration. Plant Cell, 2017. 29(5): p. 1073-1087 [PMID:28389585] - Meng WJ, et al.
Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL. Plant Cell, 2017. 29(6): p. 1357-1372 [PMID:28576846] - Zhang F,May A,Irish VF
Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL. Trends Plant Sci., 2017. 22(10): p. 815-817 [PMID:28886911] - Takatsuka H,Higaki T,Umeda M
Actin Reorganization Triggers Rapid Cell Elongation in Roots. Plant Physiol., 2018. 178(3): p. 1130-1141 [PMID:30185441]
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