PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

NF-YB

Protein Properties

Length: 158aa MW: 17562.8 Da PI: 9.1677

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10003157m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	161.9	9.1e-51	3	98	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 +eqd++lPianv++imk++lP +akisk+ak+t+qec++efisfvt+easdkc++e+rkt+ngdd++wal+tlGf++y e++ yl+kyre+e+e+ Ciclev10003157m 3 EEQDKLLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALSTLGFDNYTEAIVRYLHKYREAERER 98 79*******************************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.7E-50	2	128	IPR009072	Histone-fold
SuperFamily	SSF47113	5.97E-39	5	116	IPR009072	Histone-fold
Pfam	PF00808	3.1E-26	9	72	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	3.0E-18	36	54	No hit	No description
PROSITE pattern	PS00685	0	39	55	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	3.0E-18	55	73	No hit	No description
PRINTS	PR00615	3.0E-18	74	92	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence Send to blast
MVEEQDKLLP IANVGKIMKQ ILPPRAKISK EAKQTMQECA TEFISFVTGE ASDKCHKENR 60 KTVNGDDICW ALSTLGFDNY TEAIVRYLHK YREAERERAK NQSKVTATSS NEEKAKESSS 120 HKTSKQTTSV QQIDETSSAP SELRALKKGK SSLTNPP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	4e-40	2	93	1	92	Transcription factor HapC (Eurofung)
4g92_B	4e-40	2	93	1	92	Transcription factor HapC (Eurofung)
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in flowers, siliques and young rosettes. {ECO:0000269\|PubMed:11250072}.

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00133	DAP	Transfer from AT1G09030	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006433383.1	1e-114	nuclear transcription factor Y subunit B-4
Refseq	XP_006472120.1	1e-114	nuclear transcription factor Y subunit B-4
Swissprot	O04027	3e-56	NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBL	V4SG54	1e-112	V4SG54_9ROSI; Uncharacterized protein
STRING	XP_006472120.1	1e-113	(Citrus sinensis)
STRING	XP_006433383.1	1e-113	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM255	28	229

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09030.1	3e-57	nuclear factor Y, subunit B4

Link Out ? help Back to Top
Phytozome	Ciclev10003157m
Entrez Gene	18041437

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]