PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10002182m
Common NameCICLE_v10002182mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HD-ZIP
Protein Properties Length: 265aa    MW: 30286.7 Da    PI: 5.1287
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10002182mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox573.3e-1857110356
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      k++++t +q+++Le+ Fe ++++  +++ +LA++lgL+ rq+ vWFqNrRa+ k
  Ciclev10002182m  57 KKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLK 110
                      56689***********************************************98 PP
2HD-ZIP_I/II124.54.8e-4056148193
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                      ekkrrl+ +qvk+LE++Fe ++kLep+rKv+la+eLglqprq+avWFqnrRAR k+k+lE+dy  Lk++ydal+ ++++L++e+e+L++el+e
  Ciclev10002182m  56 EKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDHNNLQQENEALTAELRE 148
                      69***************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.56E-1848113IPR009057Homeodomain-like
PROSITE profilePS5007117.62152112IPR001356Homeobox domain
SMARTSM003898.6E-1855116IPR001356Homeobox domain
PfamPF000462.3E-1557110IPR001356Homeobox domain
CDDcd000864.45E-1557113No hitNo description
Gene3DG3DSA:1.10.10.603.0E-1959118IPR009057Homeodomain-like
PRINTSPR000319.9E-68392IPR000047Helix-turn-helix motif
PROSITE patternPS00027087110IPR017970Homeobox, conserved site
PRINTSPR000319.9E-692108IPR000047Helix-turn-helix motif
PfamPF021831.1E-14112153IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MKRFSSSDSF DALITVYKSA DKTSTKRKQI YGREFQAMMD CLEEEDCREE ASQATEKKRR  60
LTVDQVKALE KNFEVDNKLE PDRKVKLAEE LGLQPRQIAV WFQNRRARLK SKELERDYGL  120
LKANYDALRL DHNNLQQENE ALTAELRELK AKLCQENEET SHAVEAEAPV SEQSKNHVSS  180
ENANAQLLTS PPSFSSLFTG SSSSSHPSMN WVQFSDSRTI LSNVYQQPQL VKVEEQSLLF  240
NPEDPCNIFS VDQAPTLQWY FTGH*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.201780.0leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006433921.10.0homeobox-leucine zipper protein ATHB-6 isoform X1
TrEMBLV4TC130.0V4TC13_9ROSI; Uncharacterized protein
STRINGXP_006433921.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54528143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65310.16e-52homeobox protein 5