PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

GATA

Protein Properties

Length: 298aa MW: 32660.6 Da PI: 7.01

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10002006m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	50.1	3.8e-16	225	261	1	35
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+++ Tp +Rrgp g++tLCnaCGl+++ kg+ Ciclev10002006m 225 CQHCGVSEnnTPAMRRGPAGPRTLCNACGLMWANKGT 261 *****99***********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00979	3.3E-7	85	120	IPR010399	Tify domain
PROSITE profile	PS51320	13.117	85	120	IPR010399	Tify domain
Pfam	PF06200	2.8E-10	88	119	IPR010399	Tify domain
Pfam	PF06203	5.5E-15	153	194	IPR010402	CCT domain
PROSITE profile	PS51017	12.719	153	195	IPR010402	CCT domain
SMART	SM00401	1.8E-10	219	272	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	8.59	219	276	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	1.24E-11	220	270	No hit	No description
Gene3D	G3DSA:3.30.50.10	7.8E-15	223	266	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	2.44E-16	224	271	No hit	No description
Pfam	PF00320	5.4E-14	225	261	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	225	252	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MAAANPQPLQ ARPFEEHARA PPIQIEDEDG DYEDGEGMDD IDEGNINSIN IINNNNNNNN 60 TNNNSNISNN SSMVNVAEHG VVVAAASRTS ELTLSFEGEV YVFPAVTPEK VQAVLLLLGG 120 RDIPTGVPTI EVPYDQSNRG VVDTPKRSNL SRRIASLVRF REKRKERCFD KKIRYSVRKE 180 VAQRMHRKNG QFASLKESSG ASPWDSSQDG IQDGTPRPET VVRRCQHCGV SENNTPAMRR 240 GPAGPRTLCN ACGLMWANKG TLRDLSKGGR SLSMDQLEPV CTLAKIVLSF SSDHVML*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	142	147	DTPKRS

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ccl.1231	0.0	vegetative tissue

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269\|PubMed:14966217}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269\|PubMed:14966217}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006433794.1	0.0	GATA transcription factor 24 isoform X1
Refseq	XP_024039692.1	0.0	GATA transcription factor 24 isoform X1
Refseq	XP_024039693.1	0.0	GATA transcription factor 24 isoform X1
Swissprot	Q8GXL7	9e-70	GAT24_ARATH; GATA transcription factor 24
TrEMBL	V4T1M7	0.0	V4T1M7_9ROSI; Uncharacterized protein
STRING	XP_006433794.1	0.0	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21175.2	4e-73	ZIM-like 1

Link Out ? help Back to Top
Phytozome	Ciclev10002006m
Entrez Gene	18040824

Publications ? help Back to Top
Haas BJ, et al. Full-length messenger RNA sequences greatly improve genome annotation. Genome Biol., 2002. 3(6): p. RESEARCH0029 [PMID:12093376]