PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc11_g11360 | ||||||||
Common Name | GSCOC_T00032454001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | bHLH | ||||||||
Protein Properties | Length: 554aa MW: 59024.7 Da PI: 5.6462 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.2 | 6.9e-09 | 369 | 417 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq Cc11_g11360 369 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 417 58*************************9....556*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.20E-11 | 364 | 421 | No hit | No description |
SuperFamily | SSF47459 | 7.2E-17 | 364 | 435 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.485 | 366 | 416 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-16 | 367 | 433 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.0E-6 | 369 | 417 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.7E-10 | 372 | 422 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 554 aa Download sequence Send to blast |
MDMAEKDNIG PEKRNEDLLN YQSSNMPSEW QLSGNSLSNA SMGLISSGNL EQPSSSNAAV 60 IDSLCPTMWE QSLSAQNLGF NDNNVQHNTS TSNALGNRAG GLGPLRAGLD SLVGMGMGWT 120 PPNAMLKGGM FLPGAPGYLP QTLAHFPADS GFIERAARYS CFSGGNFSEL INPFNASDSM 180 NPYAGGLASM LGSQEALMGN GLNLTSEMQP PKNEMNMTES SKHVSFPTEC GPSEGIPLKN 240 EKKSESLVRS HDEAKGGVGA SGNDSDEAEF SGRGGQEELD AADGESTPKG IGSKKRKRCG 300 QDSEHNQKKG SSQQAAEVPN DGTEVQKKGD QNPTSSKPGG KNGKQGPQAS GSPKEEYIHV 360 RARRGQATNS HSLAERVRRE KISERMKFLQ DLVPGCSKVT GKAVMLDEII NYVQSLQRQV 420 EFLSMKLATV NPRLDFNIEG LLAKDVLQTR AGPSSLTFPP DMSMAYPQLH QSQQGMVQAG 480 LHGLGSPSDV LRRSINSPLT NVSGNLKEPS SHVPNVWEDE LHNIVQMGLN SSVPLSSEDI 540 SGSLAPGHMK AEL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 287 | 296 | PKGIGSKKRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027154690.1 | 0.0 | transcription factor bHLH49 isoform X1 | ||||
Refseq | XP_027154691.1 | 0.0 | transcription factor bHLH49 isoform X1 | ||||
Refseq | XP_027154693.1 | 0.0 | transcription factor bHLH49 isoform X1 | ||||
TrEMBL | A0A068TYR5 | 0.0 | A0A068TYR5_COFCA; Uncharacterized protein | ||||
STRING | EMJ26927 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2871 | 21 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68920.3 | 1e-120 | bHLH family protein |