PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cc11_g10650 | ||||||||
Common Name | GSCOC_T00032550001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 318aa MW: 34819.2 Da PI: 6.6071 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.4 | 3e-14 | 134 | 180 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ +K +Ka+ L ++++++k+L Cc11_g10650 134 KSHSEAERRRRERINNHLAKLRSLLPNT-----TKTDKASLLAEVIQHVKEL 180 79*************************9.....8****************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 17.136 | 131 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-11 | 134 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.6E-15 | 135 | 196 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.28E-15 | 135 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.6E-13 | 137 | 186 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.58E-5 | 144 | 183 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 7.5E-5 | 217 | 273 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 318 aa Download sequence Send to blast |
MQQHNSTDAY LAAAGGGRSS GGGGLMFPEV SPILPWTIPQ VHSFNPVHQF RDHDPFLLPP 60 PPSPYGGLFN RRPPPPGLQF AYEGSSSDHL RLISDTCLGQ VVQASSAAPF GLQAELQKMT 120 AQEIMDAKAL AASKSHSEAE RRRRERINNH LAKLRSLLPN TTKTDKASLL AEVIQHVKEL 180 KRQTSLIAES TPVPTEIDEL TVDNASDEDG KLVIRASLCC EDRSDLLPDL IKTLKSLRLR 240 TLKAEITTLG GRVKNVLFIT GEDDTDSDDQ QQQQQYSISS IQEALKAVME KTNGDESGSG 300 NVKRQRTNIN ILEHRSL* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 15 | 23 | GGRSSGGGG |
2 | 139 | 144 | ERRRRE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027095452.1 | 0.0 | transcription factor bHLH30-like isoform X1 | ||||
Refseq | XP_027095453.1 | 0.0 | transcription factor bHLH30-like isoform X2 | ||||
Refseq | XP_027095454.1 | 0.0 | transcription factor bHLH30-like isoform X2 | ||||
Refseq | XP_027097475.1 | 0.0 | transcription factor bHLH30-like isoform X1 | ||||
Refseq | XP_027097476.1 | 0.0 | transcription factor bHLH30-like isoform X2 | ||||
Refseq | XP_027097477.1 | 0.0 | transcription factor bHLH30-like isoform X2 | ||||
Refseq | XP_027153722.1 | 0.0 | transcription factor bHLH30 isoform X1 | ||||
Refseq | XP_027153723.1 | 0.0 | transcription factor bHLH30 isoform X2 | ||||
Refseq | XP_027153724.1 | 0.0 | transcription factor bHLH30 isoform X2 | ||||
Refseq | XP_027153725.1 | 0.0 | transcription factor bHLH30 isoform X2 | ||||
Swissprot | Q9S7Y1 | 1e-100 | BH030_ARATH; Transcription factor bHLH30 | ||||
TrEMBL | A0A068TXB1 | 0.0 | A0A068TXB1_COFCA; Uncharacterized protein | ||||
STRING | cassava4.1_010668m | 1e-159 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4083 | 24 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68810.1 | 2e-80 | bHLH family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|