PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc10_g04730
Common NameGSCOC_T00034901001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 381aa    MW: 43776.9 Da    PI: 5.3298
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc10_g04730genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.0008692115123
                  EEETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                  y C+ Cg+ ++++ +Lk+H r  H
  Cc10_g04730  92 YICSVCGRKCKTHLDLKKHFRQlH 115
                  89*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10105.0E-61282IPR029060PIN domain-like
SuperFamilySSF576678.67E-585120No hitNo description
PROSITE profilePS5015711.09492120IPR007087Zinc finger, C2H2
SMARTSM003550.006792115IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028094115IPR007087Zinc finger, C2H2
CDDcd061671.80E-9106246No hitNo description
Gene3DG3DSA:3.40.50.10105.0E-6177231IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MVRTKEGIYT AKPKKVVVLW DLDNKPPRGP PYQAAMALKK VAQHFGDLVD ISAYANRHAF  60
VHLPQWVVEE RRERRRMDIL ERKGVSTPSE PYICSVCGRK CKTHLDLKKH FRQLHERERQ  120
KKLNRMRSLK GKKRQRFKER FVDGNEKYNE AARTLTSPKV GYGLASELGR AGVFVKTVED  180
KPQAADWALK RQMQHSMSRG IDWLLLVSDD SDFSEMLRRA RAANLGTVVI GDGYRALGRQ  240
ADLWVPWNDV ENGEIKEDDL VSQIKRRRES GGRRTGRFSV SEFEGGLNGE GSVDSLMDQL  300
VGTTGFDGMR ISAFSEGEEE EDEDREEEQD WLRENQRGYV QIGLKNSIDD EDDPDEYTEE  360
EDYVLDSEEE GVEEDGLQFW *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027092390.10.0uncharacterized protein LOC113712945
RefseqXP_027092391.10.0uncharacterized protein LOC113712945
RefseqXP_027092393.10.0uncharacterized protein LOC113712945
RefseqXP_027092394.10.0uncharacterized protein LOC113712945
RefseqXP_027092395.10.0uncharacterized protein LOC113712945
RefseqXP_027092396.10.0uncharacterized protein LOC113712945
RefseqXP_027092397.10.0uncharacterized protein LOC113712945
RefseqXP_027092398.10.0uncharacterized protein LOC113712945
RefseqXP_027092399.10.0uncharacterized protein LOC113712945
RefseqXP_027092400.10.0uncharacterized protein LOC113712945
RefseqXP_027092401.10.0uncharacterized protein LOC113712945
TrEMBLA0A068U1160.0A0A068U116_COFCA; Uncharacterized protein
STRINGXP_009623477.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA122681518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.11e-147C2H2-like zinc finger protein