PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc10_g01750
Common NameGSCOC_T00024662001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 408aa    MW: 44407.3 Da    PI: 9.3011
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc10_g01750genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.3e-05170192223
                  EETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                   C+ Cg++F+  ++L++H+ + H
  Cc10_g01750 170 ACSECGEVFPKIESLEHHQAVrH 192
                  6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280169192IPR007087Zinc finger, C2H2
PROSITE profilePS501578.995169193IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.90.228.103.6E-13195403IPR012317Poly(ADP-ribose) polymerase, catalytic domain
SuperFamilySSF563992.49E-26195403No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MALLTSLPEP RKTPSEKTSH NNKKHPSKRR KKQQPQKPPS SWDQFKNLLT CKQIEGSKVH  60
DPSIPKLGSC SSICTFRDVV HGNTSRVVHR ADNSPESSSV GQETRLLSKK SSHGSSSRSF  120
SSSLRSNGTS VTYNNGSCRG MQFRKLSGCY ECHTIVDPSR YPLPRTTICA CSECGEVFPK  180
IESLEHHQAV RHAVAELGPE DSSRNIVEII FKSSWLKKDN PICSIERILK VQNTQRTIQR  240
FEDCRDAVKI RANSNSKKNP RCAADGNELL RFHCTSLTCP LGARGSSSLC GSVPGCGVCA  300
IIRHGFQGNK SSGVRTTASS GRAHDCLGLG TDGGRRAMLV CRVIAGRVKR MADDAAVEED  360
DAGTLAAGSY DSVAGYAGVY SNLEELYVFN PRAILPCFVV IYKALES*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027091943.10.0uncharacterized protein LOC113712647
TrEMBLA0A068UFR50.0A0A068UFR5_COFCA; Uncharacterized protein
STRINGXP_009616115.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51952334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-156C2H2-like zinc finger protein