PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc10_g00560
Common NameGSCOC_T00024511001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family Nin-like
Protein Properties Length: 899aa    MW: 99362 Da    PI: 6.9539
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc10_g00560genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK92.62.9e-29576627152
       RWP-RK   1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                  aek+i+l++l++yF++++kdAA+++gvc+T+LKriCRq+GIkRWP+Rkik++
  Cc10_g00560 576 AEKTITLQMLRQYFAGSLKDAARNIGVCPTTLKRICRQHGIKRWPSRKIKKV 627
                  589***********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.461566647IPR003035RWP-RK domain
PfamPF020426.0E-25579627IPR003035RWP-RK domain
SuperFamilySSF542771.3E-23788884No hitNo description
Gene3DG3DSA:3.10.20.2402.5E-22795877No hitNo description
PROSITE profilePS5174526.32798880IPR000270PB1 domain
SMARTSM006667.3E-21798881IPR000270PB1 domain
CDDcd064071.92E-41799877No hitNo description
PfamPF005641.4E-18799876IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 899 aa     Download sequence    Send to blast
MNEYGYVSTQ NTISGAQGSD SLIDLDCMDE LLLEGCWLET TEGPELLSDG PSDFNALFDA  60
SFTWPILEAI NGESNPLKST EEERQSLSGN FSAESSALSR RLWIGPRAST SVMDRLIKAL  120
GYMKDWAGDK NALIQIWVPV NKGGRRVLTT NDQPFSLDLN CPRLASYRNV SVNYQFSTEE  180
DLKESVGLPG RVFMGRVPEW TPDVQFFRTD EYPRVGHAQQ YDVRGTLAVP IFEQGSRNCL  240
GVIEVVLTTQ KINYRPELES VCRALQAVNL RSSDVSGAQN SKACDFSYQS ALPEIQEILR  300
AACGTYSLPL AQTWVPCIKQ GKGGCRHSDE NLVRCVSTVD SACYIADSHV QGFSDACSEH  360
HLLKGQGIVG RAFTTNQPCF SPDITTFTKT DYPLSHHARI FGLCAAVAIR LRSIYSGSTD  420
FVLEFFLPVD CKDAEEHQKM LSSLSLIIQK FCRGLRVITD KELLEENSVP SGGVSIPSYI  480
KFGEEMSKTE RRHSAMASQR SFWTSRHAEV EETAVVASKI QNAKPVEMLS GKFSAVRQSL  540
PDISSRKERM CGDSLTRGQC SLLDVSKTAE KRGAKAEKTI TLQMLRQYFA GSLKDAARNI  600
GVCPTTLKRI CRQHGIKRWP SRKIKKVGHS LQKIQRVIDS VQGASGSLQI ESFYTNFPEL  660
ASPNLTTAAP FSCFNSSDHP ISLNTQPEAS TLSPHASASK SPSSSCSHSS SSSQCCSTGT  720
QPHPHTLKIS GQEDLVKNNS TGFMLKRVRS DAQLDLSSDG PKFLPRSHSH VSFTEHPDPE  780
NLPPAPKETS WMSREGTTLR IKVTYGEEKI RFRMLNNWGY RDLLREVSGR FGVDDTTGFQ  840
LKYMDDDSEW ILLTCDADLE ECLDICRSSQ SQTVKLSFLC ASHPLHGSPS GSRSCDKS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027149959.10.0protein NLP5-like isoform X1
RefseqXP_027149960.10.0protein NLP5-like isoform X1
RefseqXP_027149961.10.0protein NLP5-like isoform X1
RefseqXP_027149962.10.0protein NLP5-like isoform X1
RefseqXP_027149963.10.0protein NLP5-like isoform X1
RefseqXP_027149964.10.0protein NLP5-like isoform X1
RefseqXP_027149965.10.0protein NLP5-like isoform X1
TrEMBLA0A068UFQ10.0A0A068UFQ1_COFCA; Uncharacterized protein
STRINGXP_009759077.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15982467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35270.10.0Nin-like family protein