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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc10_g00560 | ||||||||
Common Name | GSCOC_T00024511001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | Nin-like | ||||||||
Protein Properties | Length: 899aa MW: 99362 Da PI: 6.9539 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 92.6 | 2.9e-29 | 576 | 627 | 1 | 52 |
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i+l++l++yF++++kdAA+++gvc+T+LKriCRq+GIkRWP+Rkik++ Cc10_g00560 576 AEKTITLQMLRQYFAGSLKDAARNIGVCPTTLKRICRQHGIKRWPSRKIKKV 627 589***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.461 | 566 | 647 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 6.0E-25 | 579 | 627 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 1.3E-23 | 788 | 884 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 2.5E-22 | 795 | 877 | No hit | No description |
PROSITE profile | PS51745 | 26.32 | 798 | 880 | IPR000270 | PB1 domain |
SMART | SM00666 | 7.3E-21 | 798 | 881 | IPR000270 | PB1 domain |
CDD | cd06407 | 1.92E-41 | 799 | 877 | No hit | No description |
Pfam | PF00564 | 1.4E-18 | 799 | 876 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 899 aa Download sequence Send to blast |
MNEYGYVSTQ NTISGAQGSD SLIDLDCMDE LLLEGCWLET TEGPELLSDG PSDFNALFDA 60 SFTWPILEAI NGESNPLKST EEERQSLSGN FSAESSALSR RLWIGPRAST SVMDRLIKAL 120 GYMKDWAGDK NALIQIWVPV NKGGRRVLTT NDQPFSLDLN CPRLASYRNV SVNYQFSTEE 180 DLKESVGLPG RVFMGRVPEW TPDVQFFRTD EYPRVGHAQQ YDVRGTLAVP IFEQGSRNCL 240 GVIEVVLTTQ KINYRPELES VCRALQAVNL RSSDVSGAQN SKACDFSYQS ALPEIQEILR 300 AACGTYSLPL AQTWVPCIKQ GKGGCRHSDE NLVRCVSTVD SACYIADSHV QGFSDACSEH 360 HLLKGQGIVG RAFTTNQPCF SPDITTFTKT DYPLSHHARI FGLCAAVAIR LRSIYSGSTD 420 FVLEFFLPVD CKDAEEHQKM LSSLSLIIQK FCRGLRVITD KELLEENSVP SGGVSIPSYI 480 KFGEEMSKTE RRHSAMASQR SFWTSRHAEV EETAVVASKI QNAKPVEMLS GKFSAVRQSL 540 PDISSRKERM CGDSLTRGQC SLLDVSKTAE KRGAKAEKTI TLQMLRQYFA GSLKDAARNI 600 GVCPTTLKRI CRQHGIKRWP SRKIKKVGHS LQKIQRVIDS VQGASGSLQI ESFYTNFPEL 660 ASPNLTTAAP FSCFNSSDHP ISLNTQPEAS TLSPHASASK SPSSSCSHSS SSSQCCSTGT 720 QPHPHTLKIS GQEDLVKNNS TGFMLKRVRS DAQLDLSSDG PKFLPRSHSH VSFTEHPDPE 780 NLPPAPKETS WMSREGTTLR IKVTYGEEKI RFRMLNNWGY RDLLREVSGR FGVDDTTGFQ 840 LKYMDDDSEW ILLTCDADLE ECLDICRSSQ SQTVKLSFLC ASHPLHGSPS GSRSCDKS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027149959.1 | 0.0 | protein NLP5-like isoform X1 | ||||
Refseq | XP_027149960.1 | 0.0 | protein NLP5-like isoform X1 | ||||
Refseq | XP_027149961.1 | 0.0 | protein NLP5-like isoform X1 | ||||
Refseq | XP_027149962.1 | 0.0 | protein NLP5-like isoform X1 | ||||
Refseq | XP_027149963.1 | 0.0 | protein NLP5-like isoform X1 | ||||
Refseq | XP_027149964.1 | 0.0 | protein NLP5-like isoform X1 | ||||
Refseq | XP_027149965.1 | 0.0 | protein NLP5-like isoform X1 | ||||
TrEMBL | A0A068UFQ1 | 0.0 | A0A068UFQ1_COFCA; Uncharacterized protein | ||||
STRING | XP_009759077.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1598 | 24 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35270.1 | 0.0 | Nin-like family protein |