PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc09_g01680 | ||||||||
Common Name | GSCOC_T00017777001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | MYB_related | ||||||||
Protein Properties | Length: 91aa MW: 10226.7 Da PI: 10.051 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22 | 3.9e-07 | 40 | 76 | 2 | 39 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkq 39 ++++E+ l ++ ++ G+ +W++Ia +++ gRt+ + Cc09_g01680 40 PEFSEDEEMLMARMYRLVGPSRWALIAGRIP-GRTPQE 76 689****************************.***986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.504 | 34 | 85 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 1.17E-7 | 38 | 82 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.001 | 38 | 87 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-6 | 40 | 78 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.62E-7 | 41 | 84 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.8E-9 | 42 | 82 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 91 aa Download sequence Send to blast |
MADSHRTRVD GNDKVEKGTA SIEIFLSMAK GTIKRRESKP EFSEDEEMLM ARMYRLVGPS 60 RWALIAGRIP GRTPQEMEKY FTSKNASTSN * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027087767.1 | 1e-45 | transcription factor CPC-like | ||||
Refseq | XP_027185716.1 | 1e-45 | transcription factor CPC-like | ||||
TrEMBL | A0A068U783 | 5e-60 | A0A068U783_COFCA; Uncharacterized protein | ||||
STRING | cassava4.1_026343m | 1e-19 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6579 | 19 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46410.1 | 3e-15 | MYB_related family protein |