PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g11920
Common NameGSCOC_T00030555001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ERF
Protein Properties Length: 388aa    MW: 43311.1 Da    PI: 7.0071
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g11920genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.93.3e-20234284255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+++AeIrdp+ +g   r++lg+f+ta eAaka+++a+ k++g
  Cc08_g11920 234 HYRGVRQRP-WGKYAAEIRDPKRRG--SRVWLGTFDTAIEAAKAYDRAAFKMRG 284
                  7********.**********96554..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.2E-32233293IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-22234293IPR016177DNA-binding domain
SMARTSM003801.1E-37234298IPR001471AP2/ERF domain
PROSITE profilePS5103223.933234292IPR001471AP2/ERF domain
PfamPF008472.8E-14234284IPR001471AP2/ERF domain
CDDcd000185.04E-31234292No hitNo description
PRINTSPR003671.8E-13235246IPR001471AP2/ERF domain
PRINTSPR003671.8E-13274294IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MATPDEVLAL RQIQEHLFGE LSPTALFFGP ELVIDGDSNL GASNYSSQSQ SQSDSSFGSD  60
SASYDHDHNS NSNSSPSSPV PITDYLSTAD EAERKQNHCF DHFAQNSVSF ERNDPDFFKH  120
CQTNTIINFS RAPKFETIDF SEFEQKPQVI DLTSSPKPPQ SARDGKPSPT ILPPVKQCAR  180
DRKPSLTILP PVKKFEWIEF SESTQSKQVI EQARQMSLPT QSTQPKKAAE DQRHYRGVRQ  240
RPWGKYAAEI RDPKRRGSRV WLGTFDTAIE AAKAYDRAAF KMRGSKAILN FPLEAGKHAS  300
ESRASSSNKR RREAEERGRE AEEVAVKEAK KCQTPSAVKS EPESEWPFTP SSWSAMWEQN  360
VDGVFNFSPL SPVSPHPPLG CAQVRVM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-28233293161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027084196.10.0ethylene-responsive transcription factor 6-like
RefseqXP_027100852.10.0ethylene-responsive transcription factor 6-like
TrEMBLA0A068UNX00.0A0A068UNX0_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9632389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17490.19e-44ethylene responsive element binding factor 6