PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc08_g11310

Common Name

GSCOC_T00027130001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

Trihelix

Protein Properties

Length: 444aa MW: 49307.4 Da PI: 9.8202

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc08_g11310	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	60.2	4.9e-19	27	118	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqlea 87 +Wt++e+laLi+a+re++ +lrrg l+ ++W++v++++ + +++ qC++k+e+l++ry+++k+++ + + + s++ +f++++a Cc08_g11310 27 CWTQEETLALIDAYRERWYALRRGYLRTADWDAVAAAVtnrcPDASPAKTSAQCRHKMEKLRQRYRAEKQRSLSYpSGRFFSSWFFFENMDA 118 8**********************************987776677788999***************999867788899***9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.5E-20	26	119	No hit	No description
PROSITE profile	PS50090	6.806	28	88	IPR017877	Myb-like domain
SMART	SM00595	2.6E-9	35	124	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence Send to blast
MSVTTTTVAP AAADAAGKPA RKFPPPCWTQ EETLALIDAY RERWYALRRG YLRTADWDAV 60 AAAVTNRCPD ASPAKTSAQC RHKMEKLRQR YRAEKQRSLS YPSGRFFSSW FFFENMDAME 120 NGTSVSVAGS NREPENRENS ASGFPLKTFL DQNILKLKLS TKNRSTKVDG NSSPNFGFSQ 180 GVRAKNSSKN ADQKVGSDFS SKVFNGGYSS YMDIGSDKDE EEMDFHGGFR AKNVDDGMPG 240 LTGFKGKNFG KILGNSRSGF EFESLGGKGF EASDGFHMQT LGDESMVPPR LRLKRIGKVN 300 RSFDADQAKD GSWVSLGTRR KYAENLDSDL ESSGGLNGFH DQSRLGFEKR GFGCDSGGRG 360 EAKRGRSSID EMVSSIKMLG EGFMKMENMK MDIAREMEKN RMEMEMKRNE LILESQRQIV 420 DALAQSLMEI KRKKVKITAA PET*

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence Send to blast

MSVTTTTVAP AAADAAGKPA RKFPPPCWTQ EETLALIDAY RERWYALRRG YLRTADWDAV  60
AAAVTNRCPD ASPAKTSAQC RHKMEKLRQR YRAEKQRSLS YPSGRFFSSW FFFENMDAME  120
NGTSVSVAGS NREPENRENS ASGFPLKTFL DQNILKLKLS TKNRSTKVDG NSSPNFGFSQ  180
GVRAKNSSKN ADQKVGSDFS SKVFNGGYSS YMDIGSDKDE EEMDFHGGFR AKNVDDGMPG  240
LTGFKGKNFG KILGNSRSGF EFESLGGKGF EASDGFHMQT LGDESMVPPR LRLKRIGKVN  300
RSFDADQAKD GSWVSLGTRR KYAENLDSDL ESSGGLNGFH DQSRLGFEKR GFGCDSGGRG  360
EAKRGRSSID EMVSSIKMLG EGFMKMENMK MDIAREMEKN RMEMEMKRNE LILESQRQIV  420
DALAQSLMEI KRKKVKITAA PET*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	289	298	RLRLKRIGKV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027084694.1	0.0	protein FIP2-like
TrEMBL	A0A068UIG6	0.0	A0A068UIG6_COFCA; Uncharacterized protein
STRING	PGSC0003DMT400052836	1e-103	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12774	16	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	4e-36	Trihelix family protein