PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc08_g02950 | ||||||||
Common Name | GSCOC_T00037797001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | bHLH | ||||||||
Protein Properties | Length: 327aa MW: 35898.9 Da PI: 7.9298 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43 | 8.4e-14 | 108 | 159 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr l+P++ + ++ + a+i+ A+e++k+L+ Cc08_g02950 108 QRMTHIAVERNRRKQMNEHLAVLRALMPES---YVQRGDQASIVGGAIEFVKELE 159 79****************************...9******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.40E-12 | 106 | 163 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.1E-13 | 106 | 163 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.14E-16 | 106 | 176 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.945 | 107 | 158 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.5E-11 | 108 | 159 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.3E-10 | 113 | 164 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MALEALSSNE LLNFIIYDTI SATPFSSNDS NNSCHENSTN FLLDNGGLKT DNCGGAEAGG 60 GLENCSCMPP PPPPVQSQRQ QNSLAVQGRK KRRRRQRVCK NKEEAETQRM THIAVERNRR 120 KQMNEHLAVL RALMPESYVQ RGDQASIVGG AIEFVKELEH HLQSLEAQRF LLLQQHGGAN 180 DKTTTTMAAA IATATGNKCF PPAPTPFAQF FAYPQYTCSA QLPNKYTSKS KAAIADIEVT 240 LIETHANVRI LSRRRVRQLS KMVTGLQTLY LTILHLNITT LDPLVLYSIS AKVEEGCLLN 300 SADDIAGAVH HILRIIEEEA APCCQA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 87 | 95 | GRKKRRRRQ |
2 | 88 | 94 | RKKRRRR |
3 | 89 | 94 | KKRRRR |
4 | 108 | 119 | RMTHIAVERNRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027080303.1 | 0.0 | transcription factor bHLH71-like isoform X1 | ||||
Refseq | XP_027084006.1 | 0.0 | transcription factor bHLH71-like isoform X1 | ||||
Swissprot | Q9C7T4 | 4e-78 | BH096_ARATH; Transcription factor bHLH96 | ||||
TrEMBL | A0A068UXQ6 | 0.0 | A0A068UXQ6_COFCA; Uncharacterized protein | ||||
STRING | XP_009631535.1 | 1e-145 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5632 | 24 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 7e-72 | bHLH family protein |
Publications ? help Back to Top | |||
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