PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

ERF

Protein Properties

Length: 215aa MW: 23512.4 Da PI: 9.0382

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc08_g00740	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	58.8	1.3e-18	6	55	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +++GVr++ +g+Wv+eIr+p kr++lg+f tae Aa+a+++a+ ++g Cc08_g00740 6 KFRGVRQRQ-WGSWVSEIRHP-----LlkKRIWLGTFETAEAAARAYDEAAILMNG 55 89**999.******8.....335********************98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	1.8E-32	5	64	IPR001471	AP2/ERF domain
CDD	cd00018	4.24E-20	6	65	No hit	No description
PROSITE profile	PS51032	22.036	6	63	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.81E-20	6	64	IPR016177	DNA-binding domain
SMART	SM00380	2.6E-39	6	69	IPR001471	AP2/ERF domain
Pfam	PF00847	3.1E-11	6	55	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.7E-10	7	18	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.7E-10	29	45	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MVPSRKFRGV RQRQWGSWVS EIRHPLLKKR IWLGTFETAE AAARAYDEAA ILMNGQNAKT 60 NFPVVKENPN EPSPKTSTDH QDSPPLSVTA PPAESLSEIL SAKLKKCCKD PAPSLTCLRL 120 DNSQIGVWQK RTGRHSGSNW VLKVELGKNK DHQNSTQQAS LCSSSSTTTA TTTSSSSGSS 180 TTSSVGMDEE NRVAMQMVEE LLNWNCPPPY LTNP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	2e-16	5	64	1	61	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:15319479}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By wounding in cauline leaves, stems, and siliques, but not in rosette leaves. {ECO:0000269\|PubMed:15319479}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027083095.1	1e-128	ethylene-responsive transcription factor WIN1-like
Swissprot	Q3E958	1e-67	SHN3_ARATH; Ethylene-responsive transcription factor SHINE 3
TrEMBL	A0A068UZ34	1e-157	A0A068UZ34_COFCA; Uncharacterized protein
STRING	XP_004136348.1	2e-77	(Cucumis sativus)
STRING	XP_004162048.1	2e-77	(Cucumis sativus)
STRING	XP_009758054.1	4e-77	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1352	24	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25390.2	7e-57	ERF family protein

Publications ? help Back to Top
Djemal R,Khoudi H Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum). Protoplasma, 2015. 252(6): p. 1461-73 [PMID:25687296] Sadler C, et al. Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition. Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344 [PMID:26965486]