PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g18830
Common NameGSCOC_T00018687001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family NF-YB
Protein Properties Length: 254aa    MW: 28245.9 Da    PI: 6.711
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g18830genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB178.75.2e-5679174297
        NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                  +eqdrflPianv+rimkkv+P+n+kiskdaketvqecvsefisfvt+easdkcqrekrktingdd++wa++tlGfedyv plk+yl+kyrelegek
  Cc07_g18830  79 KEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVTPLKQYLNKYRELEGEK 174
                  89*******************************************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.1E-5475199IPR009072Histone-fold
SuperFamilySSF471133.11E-4181195IPR009072Histone-fold
PfamPF008085.6E-2884148IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.4E-19112130No hitNo description
PROSITE patternPS006850115131IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.4E-19131149No hitNo description
PRINTSPR006151.4E-19150168No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MADERCGIGP NVPIKGSLEN QCSLSSSSNT NNDNNNNNSS SSSLSIATVI ATYNHHNNNN  60
SNNNNGSSSS CGNNSNNNKE QDRFLPIANV GRIMKKVIPG NGKISKDAKE TVQECVSEFI  120
SFVTGEASDK CQREKRKTIN GDDIIWAITT LGFEDYVTPL KQYLNKYREL EGEKLNVPKQ  180
QQQQQQQQQH HQRLQNHDQN PIMSPYHSVY SSTNLLSQPP FVPSDQPFAL PFSQSSIQTQ  240
LPQQEHIDSV GHW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B5e-4479169292Transcription factor HapC (Eurofung)
4g92_B5e-4479169292Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027075817.11e-135nuclear transcription factor Y subunit B-7-like
SwissprotQ9SIT91e-70NFYB7_ARATH; Nuclear transcription factor Y subunit B-7
TrEMBLA0A068U8Y90.0A0A068U8Y9_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000431762e-96(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G13570.11e-69nuclear factor Y, subunit B7
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]