PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g15040
Common NameGSCOC_T00036527001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 376aa    MW: 41168.9 Da    PI: 7.0777
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g15040genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.82.4e-07157178223
                  EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                   C++Cgk F+r  nL+ H+r H
  Cc07_g15040 157 FCEICGKGFKRDANLRMHMRAH 178
                  6*******************99 PP
2zf-C2H211.80.00075280296521
                  TTTEEESSHHHHHHHHH CS
      zf-C2H2   5 dCgksFsrksnLkrHir 21 
                   Cg+sFsrk+ L  H+ 
  Cc07_g15040 280 SCGTSFSRKDKLFGHMA 296
                  5**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.93E-6153179No hitNo description
PROSITE profilePS5015711.967156183IPR007087Zinc finger, C2H2
SMARTSM003550.0015156178IPR015880Zinc finger, C2H2-like
PfamPF128740.0021157176No hitNo description
PROSITE patternPS000280158178IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.7E-6158195IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035552211244IPR015880Zinc finger, C2H2-like
SMARTSM0035513249271IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.600.001271296IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355210277301IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MSFLGNLPSS AKPPGGAAPY PGGADPSVAL LNLSTVQARM DNLQKFLSDS VNSKTLIGQD  60
HMDMVSTEIT SAIRQIIVNG AALLACTQST QATSLPQASD VEEKKVEKKM RFDTAKDTVV  120
GNQLVDPKIE VAEDEESDDY EILELDAVEL LAEHIHFCEI CGKGFKRDAN LRMHMRAHGN  180
QFKTVEALAK PARCGESGGG AEKDMIRKTR FSCPYVGCNR NKQHKKFRPL KSAICVKNHF  240
KRSHCPKMYS CNRCNKKSFS VVADLKSHLK HCGETKWKCS CGTSFSRKDK LFGHMALFEG  300
HMPAVESSPG TKEMKMDMDM EMDMDGNGSP ISDGFFDGLT LDGFGSLENY CFQDLLSPPV  360
SAAANSSGMD SFFNF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027079346.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
TrEMBLA0A068TYT60.0A0A068TYT6_COFCA; Uncharacterized protein
STRINGXP_009626824.11e-151(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA100002126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.23e-82C2H2 family protein