PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc07_g07350 | ||||||||
Common Name | GSCOC_T00040084001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | GRF | ||||||||
Protein Properties | Length: 590aa MW: 62968.1 Da PI: 8.7448 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 78.1 | 8.7e-25 | 215 | 259 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e Cc07_g07350 215 DPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPVEG 259 79****************************************985 PP | |||||||
2 | QLQ | 62.4 | 1.2e-21 | 145 | 181 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKy++an+PvP++Ll +++k Cc07_g07350 145 GPFTPSQWMELEHQALIYKYIIANVPVPSHLLIPLRK 181 59*******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 6.3E-13 | 145 | 181 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.6E-15 | 146 | 179 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 23.78 | 146 | 181 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.954 | 215 | 259 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.9E-21 | 216 | 258 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 590 aa Download sequence Send to blast |
MDFGVITTEG VGGDASCNGA GSEPFGISLE KRGGSGVLKT ERSGSIQESL RVSKSARANE 60 FCIFSQGQSP ALLRSGSGLP GNNGQTMISF SSQSQVPYFS DEDASKTSAF PFFIAPPDPL 120 CPRTSGYATE KSTEGMRGPF AKFRGPFTPS QWMELEHQAL IYKYIIANVP VPSHLLIPLR 180 KSFNPCAFSS LASGSYGSSS LGWGSFHLGF AGSTDPEPGR CRRTDGKKWR CSRDAVPDQK 240 YCERHINRGR HRSRKPVEGQ NGHAVSGSTA SKVAPIASSS SASVMSSSSA SNSLGAVHHS 300 FKNLHTRADN ASTEHLVSRM QDLHGLSAAG DSINLKSKDS PFSIQKQHAI FGGSSQTEFG 360 VVSPDSLLNP SQRCSRMSSK TSDSLLGFND HETPNQHLLR HFIDKCPKDQ SHRASISWPE 420 ELKSDWTQLS MSIPMSTSDF SSSSRSPRQD KPTLSPLRLA REIDPIQMGL SVTKDVVGQN 480 QKQANWLPAS WGNSILGGPL GEVLNSTSSN AGGFKSSSTL NLMTDVWDNS PQMGCSPTGV 540 LQKSTFVSLS NSSSGSSPRT DNKKAPEGAT LCDDILGSTL AHSTSIPSM* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. microRNA396-GRF1/GRF3 regulatory module acts as a developmental regulator in the reprogramming of root cells during cyst nematode infection, leading to the formation of the syncytium. {ECO:0000269|PubMed:12974814, ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:22419826, ECO:0000269|PubMed:22751317}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). Up-regulated in response to cyst nematode infection. {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165, ECO:0000269|PubMed:22419826}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027076603.1 | 0.0 | growth-regulating factor 1-like isoform X1 | ||||
Swissprot | O81001 | 1e-105 | GRF1_ARATH; Growth-regulating factor 1 | ||||
TrEMBL | A0A068U264 | 0.0 | A0A068U264_COFCA; Uncharacterized protein | ||||
STRING | XP_009589483.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1688 | 23 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22840.1 | 2e-85 | growth-regulating factor 1 |
Publications ? help Back to Top | |||
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