PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc07_g06900 | ||||||||
Common Name | GSCOC_T00040019001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | LBD | ||||||||
Protein Properties | Length: 222aa MW: 23810 Da PI: 7.6427 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 98.9 | 4.9e-31 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++a+pe++r+++++sl++eA r+ +Pv+Gavg++ ++++q++q+++e Cc07_g06900 2 SCNGCRVLRKGCSENCILRPCLqwiesPEAQGHATVFVAKFFGRAGLMSFISAVPENQRPALFQSLLFEAAGRTVNPVNGAVGLLGTGNWQVCQAAVE 99 6***********************************************************************************************99 PP DUF260 94 lall 97 ++l+ Cc07_g06900 100 TVLR 103 9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.769 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.8E-26 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MSCNGCRVLR KGCSENCILR PCLQWIESPE AQGHATVFVA KFFGRAGLMS FISAVPENQR 60 PALFQSLLFE AAGRTVNPVN GAVGLLGTGN WQVCQAAVET VLRGGTLRAI PDHLVGGDSS 120 DLDETVSECT TDISSNGSKM QKRRRKPDEQ AVKVMQLADL DLSLTPGFEG GKYRCLLPEK 180 RRLGSPSMNS EESGTTTCFE SNTTDHQAGT GRGPKLLSLF N* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027075302.1 | 1e-158 | LOB domain-containing protein 38-like | ||||
Swissprot | Q9SN23 | 1e-75 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | A0A068U215 | 1e-162 | A0A068U215_COFCA; Uncharacterized protein | ||||
STRING | XP_009801229.1 | 1e-108 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA966 | 24 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 6e-78 | LOB domain-containing protein 38 |