PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

ERF

Protein Properties

Length: 165aa MW: 18285.5 Da PI: 9.6005

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc07_g06220	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	54.3	3.3e-17	20	68	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykG+r +k +g+WvAeIr+p +kr r++lg++ t+ Aa+a++ a +l+g Cc07_g06220 20 YKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPVAAARAYDTAVYYLRG 68 9***99.******9...336***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	6.54E-21	19	77	IPR016177	DNA-binding domain
SMART	SM00380	2.7E-36	19	82	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	21.865	19	76	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.3E-29	19	77	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.3E-11	20	31	IPR001471	AP2/ERF domain
CDD	cd00018	1.91E-25	20	78	No hit	No description
Pfam	PF00847	7.5E-11	20	68	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.3E-11	58	78	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MEGGGGIGAG AGKKKSERLY KGIRMRKWGK WVAEIREPNK RSRIWLGSYS TPVAAARAYD 60 TAVYYLRGPT ARLNFPELLV GDTTAANGGD LSAAAIRKKA IEVGSRVDAV QSSIATHDHH 120 DHGRSHHHRH HDHATPTQLK PCWFQEKPDL NEKPEPEDPD VDYW*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	3e-16	2	76	3	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF743542	0.0	KF743542.1 Coffea arabica ERF transcription factor 03 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006339868.1	4e-81	PREDICTED: ethylene-responsive transcription factor RAP2-10-like
Swissprot	O22174	4e-52	ERF08_ARATH; Ethylene-responsive transcription factor ERF008
TrEMBL	A0A068U2G6	1e-118	A0A068U2G6_COFCA; Uncharacterized protein
STRING	PGSC0003DMT400010228	1e-80	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA943	23	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23340.1	8e-51	DREB and EAR motif protein 3

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sazegari S,Niazi A,Ahmadi FS A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes. Bioinformation, 2015. 11(2): p. 101-6 [PMID:25848171]