PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g06130
Common NameGSCOC_T00039908001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 408aa    MW: 44092.3 Da    PI: 5.6935
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g06130genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.57.8e-16152198455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  Cc07_g06130 152 VHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 198
                  6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.3E-19145205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.02E-19145207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.86148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.59E-13151193No hitNo description
PfamPF000102.7E-13152198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-17154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MANLYDTANC SSSSPDDPDD FSLFLHQIML RSRTSSSTSF MAQKGNEVQS YPGNQGCGLH  60
LVSGTERISI PEAPSAGLQH WSYGGGFTSP GLGSFCQESG VNVSSSSVSV ATMDNDLNDY  120
DCESEGLEVL EEAMVKPTAP RNASKRSRAA EVHNLSEKRR RSRINEKMKA LQNLIPNSNK  180
TDKASMLDEA IEYLKQLQLQ VQLLTVRNGL SLYPMCLPGV LPSNQVPETR TEYEDNRSSD  240
TSLASALPLK PVTPTNILFD LPDNFKKAKQ ASDVNQSKLS DSEDAFAPAS IIHGNHRPIQ  300
FPLPGTSKGT CMGQKSPSQQ ANQDLSRRKS VAKHIGAEAT GSTALNALPS GLEQNILEAW  360
VLGRDQSGGR LLKNMECKNL LLSQVDGTQT GPSPLVDDSI KAERCDF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027074296.10.0transcription factor PIF4-like isoform X2
TrEMBLA0A068U4G80.0A0A068U4G8_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA98502227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.12e-33bHLH family protein