 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Cc06_g23190 |
| Common Name | GSCOC_T00040608001 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
|
| Family |
ERF |
| Protein Properties |
Length: 288aa MW: 32205.2 Da PI: 6.6717 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cc06_g23190 | genome | CGSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 59.3 | 9.2e-19 | 35 | 84 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
+y GVr+++ +grWvAeI+d + ++ r +lg+f taeeAa+a+++a+ l+g
Cc06_g23190 35 KYVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETAEEAARAYDEAACLLRG 84
8********.7*********32...35**********************99987 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0000302 | Biological Process | response to reactive oxygen species |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0035865 | Biological Process | cellular response to potassium ion |
| GO:0048528 | Biological Process | post-embryonic root development |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 288 aa
Download sequence Send
to blast |
MEIHFQQPEQ EFAIPVSKMS NKFKGRSRSS GQNNKYVGVR QRPSGRWVAE IKDTTQKIRM 60
WLGTFETAEE AARAYDEAAC LLRGSNTRTN FVPQQISPDS PLASRIKTLL NKRKNAKVPR 120
SNTDMHESSG ATPSPANSVS VNNCIASSSN VISFEQKTPD GHLFDDAYKP DLSNCCAKGF 180
EMEMGPSYHD QTHIPSSGLQ AQGFDHRFAF STTQDHHQLL QLPKLNESGL PEIANHHMEL 240
SEFERMKVER QISASLYAMN GVQEYMETVL DPIEALWDLP PLCSLLC*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1gcc_A | 2e-14 | 36 | 91 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
| 5wx9_A | 2e-14 | 32 | 91 | 11 | 71 | Ethylene-responsive transcription factor ERF096 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor involved in symbiotic nodule signaling in response to rhizobial Nod factors (NFs) (PubMed:17449807, PubMed:17827349). Binds to the GCC-box (NF-responsive box) of ENOD11 promoter. Acts as transcriptional activator of NF-responsive box-containing target gene promoters in root hairs (PubMed:17827349). Functions as a transcriptional regulator required for root infection by symbiotic rhizobia, infection thread (IT) formation and maintenance, and nodule development. Necessary for NF-induced gene expression and spontaneous nodulation activated by CCAMK. Functions downstream of CCAMK to activate nodulation gene expression (PubMed:17449807). Involved in early stages of root nodule development. Functions redundantly with ERN2. Is essential with ERN2 for the initiation of root hair infection, and nodule organogenesis and development. Required for accurate expression of the NF signaling genes ENOD11 and ENOD12 (PubMed:23077241, PubMed:27208242). {ECO:0000269|PubMed:17449807, ECO:0000269|PubMed:17827349, ECO:0000269|PubMed:23077241, ECO:0000269|PubMed:27208242}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Induced in roots from 1 to 21 day after inoculation with Sinorhizobium meliloti (PubMed:17449807). Induced by Nod factors in root hairs (PubMed:17827349). {ECO:0000269|PubMed:17449807, ECO:0000269|PubMed:17827349}. |
