PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g21760
Common NameGSCOC_T00015574001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family RAV
Protein Properties Length: 315aa    MW: 35895.4 Da    PI: 7.4972
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g21760genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.68.7e-104289155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 +++kGV   + +g W A+I+       + r++lg+f ++ +Aa a++ a+ kl+g
  Cc06_g21760 42 TRFKGVVAQR-NGHWGAQIYA------HDRIWLGTFKSEIDAAMAYDSAAIKLRG 89
                 5799**7555.8*******99......7**********99*************98 PP
2B384.68.6e-27158255185
                  EEEE-..-HHHHTT-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                  f k+ltpsdv+k++rlv+pkk+a  +                   e +++l++ d+s rsW+++++y+k+s+++v+t+GW++Fv+++gL+++D v+F+
  Cc06_g21760 158 FHKELTPSDVGKLNRLVIPKKYALMYfprlncdvqetdrdiA--GEDDTELVFFDRSMRSWKFRYCYWKSSQSFVFTRGWNKFVRDKGLRAKDLVIFS 253
                  89******************************9998888442..447789***********************************************9 PP

                  E- CS
           B3  84 ld 85 
                  l 
  Cc06_g21760 254 LC 255
                  75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.64E-214299No hitNo description
SuperFamilySSF541711.24E-134398IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-154397IPR001471AP2/ERF domain
PROSITE profilePS5103216.2784397IPR001471AP2/ERF domain
SMARTSM003803.7E-1743103IPR001471AP2/ERF domain
PfamPF008471.3E-44389IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.4E-31155257IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-27156256IPR015300DNA-binding pseudobarrel domain
CDDcd100172.23E-24156254No hitNo description
SMARTSM010193.4E-20158263IPR003340B3 DNA binding domain
PROSITE profilePS5086313.098158272IPR003340B3 DNA binding domain
PfamPF023629.5E-24158255IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MQEESEICGT ATNSIQEIFD SNSSSHLIQN KRQKQDTDVA STRFKGVVAQ RNGHWGAQIY  60
AHDRIWLGTF KSEIDAAMAY DSAAIKLRGG DSYRNFPWTS ITKEEPKFQS QFSTQAVLNM  120
IKDGSYPSKF VDYLRAQSFV QSFATVPSNE GFLCKKLFHK ELTPSDVGKL NRLVIPKKYA  180
LMYFPRLNCD VQETDRDIAG EDDTELVFFD RSMRSWKFRY CYWKSSQSFV FTRGWNKFVR  240
DKGLRAKDLV IFSLCEFKDG SDELQSVLMI DGGYHESFHG ALTTNSSKGE NNLPEMEQNG  300
SVERGLKLFG VQII*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A7e-2515425910107DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027067685.10.0AP2/ERF and B3 domain-containing transcription factor At1g51120-like
SwissprotQ9C6882e-91RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
SwissprotQ9C6P52e-91RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A068V5020.0A0A068V502_COFCA; Uncharacterized protein
STRINGVIT_11s0037g00010.t011e-110(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52522339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.17e-94RAV family protein