PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g16670
Common NameGSCOC_T00030653001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 898aa    MW: 98378.4 Da    PI: 5.0021
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g16670genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding285e-09838890346
                      SS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqk 46 
                      +WT+ E+e+l+++v++l ++      Wk I +  g     gRt  ++k++w++
      Cc06_g16670 838 PWTKAEEEKLKEGVQRLSSPhdrsiPWKQILEFGGdvfqRGRTTIDLKDKWRN 890
                      8***************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.102.2E-9574626IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579037.97E-9574626IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS500168.742575624IPR019787Zinc finger, PHD-finger
SMARTSM002492.2E-7577622IPR001965Zinc finger, PHD-type
PROSITE patternPS013590578621IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500906.829838892IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.4E-8838893IPR009057Homeodomain-like
SuperFamilySSF466893.05E-8838893IPR009057Homeodomain-like
CDDcd116606.27E-12838893No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 898 aa     Download sequence    Send to blast
MASEIPVPST VAWSWVIEAL SRSKQADTSL LIDIIKKAPE VSDDELGKNC REVVSLKILE  60
SLIVKGNQNK NKDAATVGQK LELDPSNNCE DVLRQISEMS AMDLTAVAPE MLNGDVQSFI  120
VHKRASLPKP ALQKLKDAIL EGSHSILSSL KERSGLTVTT QCNDDIPVNG GNSNVLAQRL  180
EDCSINNKVT LPYGNAGSPT HDNMDDESQE NLPDTNLLPA KRKTAAMRSE IVEIQTDGDQ  240
TTLDDCCTSH VQATKKFKQK ANFTDDTVVQ NAIAPTTHGP STTLSEGVVR YIEKEGCNSK  300
KEVQCGSSTP QNVDDDLEGN FPESNSLPAK RNRTAIAAEN SEGKTLKDQI PLGDGCDIRG  360
EVVKKFKEDG NSMMDDIDED TVASPVHGLM KFSSEGTVKH IEKEGCNLET EVQVGGIESN  420
GSPHGDDDQH YQLKRIAQSS HAFHQDHSVC DLQVPHDDAK VAELHAELDG QNNSVDETDG  480
HDQGFELQTE NATSLAMGVM EKNNSPENPV QKFEGNFQLS FGGSGSKDDM QHNPDFDMTS  540
DSDDYRDERM DIALKKDALL SSQCTYSQDS FATQAKYCVK CNKEGQLLVC SSDTCQLAVH  600
SSCLPSAAHF DGNGKFYCPF CAYSRAISEY MQVKRKASFA RKDLASFIGV QTVCQQKKAT  660
MKLGRESRNE LQKNEGNNSE DFVNKVSDSH CGVKMGNKHQ SEPPLSCSSD HSHSGEKVVS  720
PSDGMPNTLV SGNLEPQCQL LGVQVEQPVV AHPVHGSDVD CKEAHMADRN EGNAGAEGKK  780
VSEIPESALP QEPVCGPISE SSEEDNEKSV RSYSIRLRRP IKNYTYPAIP QLRRKILPWT  840
KAEEEKLKEG VQRLSSPHDR SIPWKQILEF GGDVFQRGRT TIDLKDKWRN ICKGGPR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027173316.10.0uncharacterized protein LOC113772998 isoform X1
RefseqXP_027173317.10.0uncharacterized protein LOC113772998 isoform X1
TrEMBLA0A068UNF00.0A0A068UNF0_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA340689