PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g16660
Common NameGSCOC_T00030654001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ERF
Protein Properties Length: 287aa    MW: 32671.2 Da    PI: 4.9975
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g16660genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.9e-202978255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                  y+GVr++  +g+WvAeIr+p++   r+r +lg+f taeeAa a+++a+++l+g
  Cc06_g16660 29 EYRGVRQRT-WGKWVAEIREPKK---RTRLWLGSFATAEEAAMAYDEAARRLYG 78
                 69****999.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.78E-312888No hitNo description
PfamPF008472.6E-132978IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-212987IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.8E-302987IPR001471AP2/ERF domain
PROSITE profilePS5103222.6032986IPR001471AP2/ERF domain
SMARTSM003808.4E-362992IPR001471AP2/ERF domain
PRINTSPR003672.2E-103041IPR001471AP2/ERF domain
PRINTSPR003672.2E-105268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MDGYRKTTLK PWKKGPARGK GGPQNAMCEY RGVRQRTWGK WVAEIREPKK RTRLWLGSFA  60
TAEEAAMAYD EAARRLYGPD AYVNLPHLRS NFNPLNKSQK FKWFPSNSLV SMFPSTGLLN  120
LNAQPSVHVI HQRLQELKET GLLCQTSSAS TSSSNPKSDV EYVDDHPHVE SLEGKNNDEA  180
EHPWENKSLN QEEKPQIDLN EFLQQLGILK KEDQPGVSEV PSNFIDKDFS PKDDDVFTNL  240
PENIFNWETP SELPGIEDNQ LVENSRFHVD NDNDDDPSFP PSIWNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-173086360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-173091667ATERF1
3gcc_A2e-173091667ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00411DAPTransfer from AT3G57600Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027177522.10.0dehydration-responsive element-binding protein 2F
SwissprotQ9SVX55e-91DRE2F_ARATH; Dehydration-responsive element-binding protein 2F
TrEMBLA0A068UNP50.0A0A068UNP5_COFCA; Uncharacterized protein
STRINGVIT_08s0007g08150.t011e-120(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA70982329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.13e-77ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]