PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g09920
Common NameGSCOC_T00041851001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family CPP
Protein Properties Length: 607aa    MW: 66206.1 Da    PI: 8.2493
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g09920genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.81.2e-14153192242
          TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                  ++k+CnCk+s+Clk+YCeCfa+g +C+  C+C +C+N+ e+
  Cc06_g09920 153 KQKQCNCKHSRCLKLYCECFASGIYCDG-CNCVNCFNNVEN 192
                  89**************************.********9875 PP
2TCR50.93.2e-16237276140
          TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                  k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  Cc06_g09920 237 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 276
                  589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011149.9E-18152192IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.548153277IPR005172CRC domain
PfamPF036383.0E-11154189IPR005172CRC domain
SMARTSM011148.4E-20237278IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.2E-12240275IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MEQSEGGDFP PKNVQSETTG QQQPPPQVGT DIPPKKLARQ LDFTGYTGVS SAAASSATAT  60
AALREHTQQT QPPQVAVMPS LPQPQLQQPV PRPTQPPKSQ LQPQPQPPIP LMSMQQPPVP  120
PAVHPQMRPM KPESPRPRPR SNAGDAKDGT PKKQKQCNCK HSRCLKLYCE CFASGIYCDG  180
CNCVNCFNNV ENEAARREAV ENTLERNPNA FRPKIASSPH GIRDSREEPG EGLVIGKHNK  240
GCHCKKSGCL KKYCECFQAN ILCSENCKCM DCKNFEGSEE RQALFHGDHA NNIAYIQQAA  300
NAAITGAIGS SGYGSPPVNK KRKGQELFFA STVKDPLNRL GQLLLMYLQA NHMKTTVPSS  360
TLSSIPGARL GNPAGMGPSK FTYRSLLADI IQPQDLKELC SVLVVYSAEA AKMLADERNA  420
TERSSQEHRE SHLASTQDQS QNQKDLSVAE KARLADSFDG NSSEKIGPDE SVSDGADVSK  480
SRPMSPGTLA LMCDEQDAMF TTAASPSDLT GQSNMSCQLP HGQGLTEAYA EQERIVLTKF  540
RDCLNKLVTL GEIKGKLIFL FSLLALRRIL FSKIQAYLMN PNCLKPIKQC RHGNLSLDPR  600
YPAEYS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-301442861132Protein lin-54 homolog
5fd3_B1e-301442861132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027066000.10.0protein tesmin/TSO1-like CXC 5
RefseqXP_027069778.10.0protein tesmin/TSO1-like CXC 5
RefseqXP_027069803.10.0protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD10.0TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A068U4910.0A0A068U491_COFCA; Uncharacterized protein
STRINGXP_010105053.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24012455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-152Tesmin/TSO1-like CXC domain-containing protein