PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g04060
Common NameGSCOC_T00023710001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 531aa    MW: 59471.1 Da    PI: 6.6284
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g04060genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.22.5e-10434481448
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      WT  E ++l+d+v ++G g+W++I + +     +Rt+ ++k++w+++l
      Cc06_g04060 434 WTVSEVKKLIDGVSKYGVGRWSRIKKDLFpssAHRTPVDLKDKWRNLL 481
                      **************************9988****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.13426485IPR017930Myb domain
SuperFamilySSF466894.74E-16428489IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-13428485IPR009057Homeodomain-like
SMARTSM007173.9E-11430483IPR001005SANT/Myb domain
CDDcd116609.81E-21434482No hitNo description
PfamPF139217.7E-9434495No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MEDESAIPVL EDEAIQFECL LVEPQDDHVS VDAFLCFHRN SPEKCMEMED IPCKFGGDNF  60
GTDPERKHLL GQERGLDIKH SEIEAENFLA PNGPSSVCED YLLDADFGEN GKKLDHDSGI  120
ELQKLVSGSY DPADNAGDNE TSHKSDLSGP TVLNKCMGDP DMNDSTSHDI FSCTADNEMS  180
LEERWFKYPT FTVENMEEDV SSLFLESNNK TMGCTHNVAS GEVLCPLTAN QETKHVPMGE  240
NKNVSLLGKD VSPSKSPIQA SIATHAEKRL RKPPQRFIDE LSEPKSRPPK RREVSTPSSR  300
GKFPRVGSHK HCDIKSRAER LSSEDSAGKA IQVPFGPIVH KESWTSCALP LVQKESRTSR  360
APIVAKVLQL DKKPLLQPHK QAFVPRHKEA VLQPHKEAVL QPHKESSVDE SEEDDIAEVK  420
LGEDGGRRKH HILWTVSEVK KLIDGVSKYG VGRWSRIKKD LFPSSAHRTP VDLKDKWRNL  480
LKASCAQIEG KKGEDRKRNL AWRPLPKTIL RRVSELATIH PYPRDLRSKR *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1286291RPPKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027071405.10.0uncharacterized protein LOC113696212
RefseqXP_027071406.10.0uncharacterized protein LOC113696212
RefseqXP_027071407.10.0uncharacterized protein LOC113696212
RefseqXP_027071408.10.0uncharacterized protein LOC113696212
TrEMBLA0A068UDZ00.0A0A068UDZ0_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA91551723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.12e-27TRF-like 6