PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc06_g00410 | ||||||||
Common Name | GSCOC_T00023217001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | B3 | ||||||||
Protein Properties | Length: 853aa MW: 94670 Da PI: 7.2023 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58 | 1.7e-18 | 298 | 398 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+kvl+ sd+++ grlvlpk +ae++ ++++e+ l+++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e++l++ Cc06_g00410 298 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVQGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD-PEGKLLM 393 99**************************555567778***************9989999999***9.********************876.8888888 PP EEE-S CS B3 95 kvfrk 99 +++++ Cc06_g00410 394 GFRKA 398 88765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.7E-29 | 290 | 398 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.14E-19 | 295 | 397 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.93E-22 | 296 | 397 | No hit | No description |
PROSITE profile | PS50863 | 11.152 | 298 | 399 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.4E-21 | 298 | 399 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.6E-16 | 298 | 398 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 13.655 | 559 | 609 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 1.1E-10 | 564 | 606 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:2000034 | Biological Process | regulation of seed maturation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 853 aa Download sequence Send to blast |
MDSKVCMNQQ CTSSSSSSSI DLKRGWPLRS GGFATLCHHC GIAYEQLVFC DKFHSNDSGW 60 RECTTCGKTL TGEKNKDCRV FSADDGGGKQ FTTVGSQSNV GITDKMKLVQ FGDDAGSSDQ 120 SQLFLSQTDD RIESLGQRKM KENFLTSGEF GSPFLSVLNQ TSVEAAQNAQ LNEYKEYMPI 180 KDTHGSSVQT NLTISPPATS GDKIFLPAVV AEERPLNKKS SSFSQGSRSR HLLPKPVKSI 240 MAAGLEANVS SLTQLRVARP PVEGRIKNQL LPRYWPRITD QELRQISGDS NSTVVPLFEK 300 VLSASDAGRI GRLVLPKACA EAYFPPISQP EGLPLRIQDV QGKEWVFQFR FWPNNNSRMY 360 VLEGVTPCIQ SMQLQAGDTV TFSRMDPEGK LLMGFRKASL MQDNKHLSSI PKGSFSSEPF 420 FLPGADNLHS ANSQSALLDS VKGSGVFPLS ALSKHFSAVE FGWHIAEMNG EKTLDGIFPS 480 PMLVPERKRS RNIGSKSKRL LIDSQDAFEL KLSWEELQDM LCPPPCVKPS TVAIEDHEFE 540 EYDQPPVFGK KSIFTMRQSG EQEQWAQCDS CLKWRRLPVN VLLPPKWTCQ EHTWALSRPS 600 CSGPEDLSPH ELESLLKMSK ELKKQKIASG LKSAHEHESS DPDGLGNSKA VRGDTSGTSA 660 ASIATTTKHP RHRPGCSCIV CIQPPSGKGK HKPTCTCNVC MTVKRRFKTL MMRKKKRQSE 720 REAEIAQRNK FDWVSKEEAE VESYQQLEIG KEQLDLNCHP DRENLQQSSS RVSMVSLLQE 780 ASLPLQTYLK QNGLTSLVSD QRVSSGSNVL LPQVTRESEL QFDEDQCLSH EIQEQEVKEE 840 LSETDQAGND PS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 3e-67 | 276 | 399 | 2 | 125 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 703 | 714 | KRRFKTLMMRKK |
2 | 703 | 716 | KRRFKTLMMRKKKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027069391.1 | 0.0 | B3 domain-containing transcription repressor VAL2-like isoform X4 | ||||
Swissprot | Q6Z3U3 | 0.0 | Y7797_ORYSJ; B3 domain-containing protein Os07g0679700 | ||||
TrEMBL | A0A068UCW0 | 0.0 | A0A068UCW0_COFCA; Uncharacterized protein | ||||
STRING | XP_009768196.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1491 | 23 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 0.0 | HSI2-like 1 |
Publications ? help Back to Top | |||
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