PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g00410
Common NameGSCOC_T00023217001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family B3
Protein Properties Length: 853aa    MW: 94670 Da    PI: 7.2023
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g00410genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3581.7e-18298398199
                  EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                  f+kvl+ sd+++ grlvlpk +ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e++l++
  Cc06_g00410 298 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVQGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD-PEGKLLM 393
                  99**************************555567778***************9989999999***9.********************876.8888888 PP

                  EEE-S CS
           B3  95 kvfrk 99 
                  +++++
  Cc06_g00410 394 GFRKA 398
                  88765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.7E-29290398IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-19295397IPR015300DNA-binding pseudobarrel domain
CDDcd100174.93E-22296397No hitNo description
PROSITE profilePS5086311.152298399IPR003340B3 DNA binding domain
SMARTSM010196.4E-21298399IPR003340B3 DNA binding domain
PfamPF023628.6E-16298398IPR003340B3 DNA binding domain
PROSITE profilePS5105013.655559609IPR011124Zinc finger, CW-type
PfamPF074961.1E-10564606IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 853 aa     Download sequence    Send to blast
MDSKVCMNQQ CTSSSSSSSI DLKRGWPLRS GGFATLCHHC GIAYEQLVFC DKFHSNDSGW  60
RECTTCGKTL TGEKNKDCRV FSADDGGGKQ FTTVGSQSNV GITDKMKLVQ FGDDAGSSDQ  120
SQLFLSQTDD RIESLGQRKM KENFLTSGEF GSPFLSVLNQ TSVEAAQNAQ LNEYKEYMPI  180
KDTHGSSVQT NLTISPPATS GDKIFLPAVV AEERPLNKKS SSFSQGSRSR HLLPKPVKSI  240
MAAGLEANVS SLTQLRVARP PVEGRIKNQL LPRYWPRITD QELRQISGDS NSTVVPLFEK  300
VLSASDAGRI GRLVLPKACA EAYFPPISQP EGLPLRIQDV QGKEWVFQFR FWPNNNSRMY  360
VLEGVTPCIQ SMQLQAGDTV TFSRMDPEGK LLMGFRKASL MQDNKHLSSI PKGSFSSEPF  420
FLPGADNLHS ANSQSALLDS VKGSGVFPLS ALSKHFSAVE FGWHIAEMNG EKTLDGIFPS  480
PMLVPERKRS RNIGSKSKRL LIDSQDAFEL KLSWEELQDM LCPPPCVKPS TVAIEDHEFE  540
EYDQPPVFGK KSIFTMRQSG EQEQWAQCDS CLKWRRLPVN VLLPPKWTCQ EHTWALSRPS  600
CSGPEDLSPH ELESLLKMSK ELKKQKIASG LKSAHEHESS DPDGLGNSKA VRGDTSGTSA  660
ASIATTTKHP RHRPGCSCIV CIQPPSGKGK HKPTCTCNVC MTVKRRFKTL MMRKKKRQSE  720
REAEIAQRNK FDWVSKEEAE VESYQQLEIG KEQLDLNCHP DRENLQQSSS RVSMVSLLQE  780
ASLPLQTYLK QNGLTSLVSD QRVSSGSNVL LPQVTRESEL QFDEDQCLSH EIQEQEVKEE  840
LSETDQAGND PS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A3e-672763992125B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1703714KRRFKTLMMRKK
2703716KRRFKTLMMRKKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027069391.10.0B3 domain-containing transcription repressor VAL2-like isoform X4
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A068UCW00.0A0A068UCW0_COFCA; Uncharacterized protein
STRINGXP_009768196.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14912365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]