PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc05_g15850
Common NameGSCOC_T00038638001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 441aa    MW: 50555.4 Da    PI: 7.055
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc05_g15850genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3926.6e-120444401374
         GRAS   1 lvelLlecAeavss.gdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaal............... 81 
                  +++lL++cAe +ss +d + a++l++ l  +++p+gd+++Rl++ ft+AL+ rl+r  +++l ++lp ++++  +  +++++l               
  Cc05_g15850  44 MRQLLISCAELMSSsSDSSSAHRLITILMANSNPYGDSTERLIHQFTRALSLRLNRyATTTLLNTLPNTQQHLGHPLNNTFFLthpasinhmpqvves 141
                  589*******998847888*************************************778888889988888866633333333578888899999999 PP

         GRAS  82 ..........klfsevsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakf 168
                              +++v+P+++fs+ltaNqaIl+a+++  e++Hi+Df+i++GlQWp+++qa+ +R  + pslRiTg g+    + e+l++tg+rLakf
  Cc05_g15850 142 deqallqtayLSLNQVTPFIRFSQLTANQAILDAIDQGqEAIHILDFNIMHGLQWPPFMQAIVER-YPRPSLRITGTGN----DLETLRRTGDRLAKF 234
                  999888665333***********************876599***********************9.899**********....*************** PP

         GRAS 169 AeelgvpfefnvlvakrledleleeL....rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262
                  A++lg++f+f++l+ +  ed  +  L     + pgE+laVn+v+ lhrll+++  l+     +L+ +k ++P+vv+++e+ea+hn++ Fl+rf+eal+
  Cc05_g15850 235 AHSLGLRFQFHPLHLH-NEDDPIAVLssavVLLPGESLAVNCVHYLHRLLKDRDGLRL----FLHRIKVMNPRVVTMAEREANHNHPLFLQRFVEALD 327
                  ************8444.33333444411115666****************77777776....************************************ PP

         GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv 359
                  +y+a+fdslea+lp++s+er +vE++++greiv++va+ g++rrerhe++++W+ +++++GF++vpls +a +qaklllr ++ s+gy+++  ++s++
  Cc05_g15850 328 HYAAVFDSLEATLPPNSRERLNVEQVWFGREIVDIVAADGDHRRERHERFRSWELMFRSCGFNNVPLSPFALSQAKLLLRLHYpSEGYQLHILNDSFF 425
                  ************************************************************************************************** PP

         GRAS 360 lgWkdrpLvsvSaWr 374
                  lgW+++ L+svS+Wr
  Cc05_g15850 426 LGWQNQLLYSVSSWR 440
                  **************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.58118419IPR005202Transcription factor GRAS
PfamPF035142.3E-11744440IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010223Biological Processsecondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MLGSFGSSSR EVEEDEPSPP EHHHVHYHQI QQYRSFTSPT LAHMRQLLIS CAELMSSSSD  60
SSSAHRLITI LMANSNPYGD STERLIHQFT RALSLRLNRY ATTTLLNTLP NTQQHLGHPL  120
NNTFFLTHPA SINHMPQVVE SDEQALLQTA YLSLNQVTPF IRFSQLTANQ AILDAIDQGQ  180
EAIHILDFNI MHGLQWPPFM QAIVERYPRP SLRITGTGND LETLRRTGDR LAKFAHSLGL  240
RFQFHPLHLH NEDDPIAVLS SAVVLLPGES LAVNCVHYLH RLLKDRDGLR LFLHRIKVMN  300
PRVVTMAERE ANHNHPLFLQ RFVEALDHYA AVFDSLEATL PPNSRERLNV EQVWFGREIV  360
DIVAADGDHR RERHERFRSW ELMFRSCGFN NVPLSPFALS QAKLLLRLHY PSEGYQLHIL  420
NDSFFLGWQN QLLYSVSSWR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-565143926378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027061607.10.0scarecrow-like protein 18
RefseqXP_027170112.10.0scarecrow-like protein 18
SwissprotQ9ZWC51e-130SCL18_ARATH; Scarecrow-like protein 18
TrEMBLA0A068UYY70.0A0A068UYY7_COFCA; Uncharacterized protein
STRINGXP_009618056.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112982225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-129GRAS family protein
Publications ? help Back to Top
  1. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]