PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

GRAS

Protein Properties

Length: 587aa MW: 65291.7 Da PI: 6.3123

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc05_g13080	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	425	6e-130	216	585	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l++lL+ecA+a+ +++le+ ++l+++ + +s +g+p+qRl ay++e+L ar s++++y++l+++e + ++ l+++++++e++P+lkf++++a Cc05_g13080 216 LKQLLMECARAFYENELENFEKLVETARGAVSITGEPIQRLGAYMLEGLIARKEASGTNIYRTLRCKEPE---GKDLLSYMHILYEICPYLKFGYMAA 310 689****************************************************************9...9******************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 N aI ea +e+r+Hi+Df+i qG+QW++LlqaLa+Rp+g+p++RiTg+++p s+ + e l ++g+rLa + e++++p+ef++ v +++ ++L Cc05_g13080 311 NGAIAEACRNEDRIHIVDFQIAQGTQWMTLLQALAARPSGAPHVRITGIDDPVSQyaRGEGLAAVGKRLAAISEKFNIPVEFHA-VPVFAPEVTRDML 407 ************************************************999999**********************.6888999** PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 ++pgEalaVn+ lqlh+++desv+++++rd +L++vk l+Pkvv++veqe+++n+++Fl rf e+leyysa+f+s+++++pr+ +eri+vE+++l+r Cc05_g13080 408 CIRPGEALAVNFPLQLHHTPDESVDVTNPRDGLLRMVKALNPKVVTLVEQESKTNTAPFLPRFWETLEYYSAIFESIDVTMPRDRKERINVEQHCLAR 505 ********************************************************************************************** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +ivn++aceg+er+erhe ++kW++r+++aGF+++pls+++++ ++ llr ++ + y++ e +g+++lgWkdr+L+s+SaW Cc05_g13080 506 DIVNIIACEGKERVERHELFGKWKSRFTMAGFRQYPLSSYVNSVIRGLLRCYS-EHYTLVEADGAMLLGWKDRNLISASAW 585 *********************************************9999.66*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	64.222	190	567	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.1E-127	216	585	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 587 aa Download sequence Send to blast
MDSHQFFGYS VAGADISSYP SYSTAPSVPN RLYGSLKFEL RNSPNSPFLS HFDSETLTTL 60 SDGQEQHSST ENLSEASPSC NSSLNYTSSC YQQLSSSPDS SQEKPQISSG GTTLFQNPNN 120 GHNIKYTLQQ LETALMGPDE EATTSAPSVG ENKGPQASGQ KSRALSQENQ PLGSQIIHSQ 180 PSYALHLRKS GNELPMEKRL RAIEELSLKG IPPTNLKQLL MECARAFYEN ELENFEKLVE 240 TARGAVSITG EPIQRLGAYM LEGLIARKEA SGTNIYRTLR CKEPEGKDLL SYMHILYEIC 300 PYLKFGYMAA NGAIAEACRN EDRIHIVDFQ IAQGTQWMTL LQALAARPSG APHVRITGID 360 DPVSQYARGE GLAAVGKRLA AISEKFNIPV EFHAVPVFAP EVTRDMLCIR PGEALAVNFP 420 LQLHHTPDES VDVTNPRDGL LRMVKALNPK VVTLVEQESK TNTAPFLPRF WETLEYYSAI 480 FESIDVTMPR DRKERINVEQ HCLARDIVNI IACEGKERVE RHELFGKWKS RFTMAGFRQY 540 PLSSYVNSVI RGLLRCYSEH YTLVEADGAM LLGWKDRNLI SASAWH*

Sequence ? help Back to Top

Protein Sequence Length: 587 aa Download sequence Send to blast

MDSHQFFGYS VAGADISSYP SYSTAPSVPN RLYGSLKFEL RNSPNSPFLS HFDSETLTTL  60
SDGQEQHSST ENLSEASPSC NSSLNYTSSC YQQLSSSPDS SQEKPQISSG GTTLFQNPNN  120
GHNIKYTLQQ LETALMGPDE EATTSAPSVG ENKGPQASGQ KSRALSQENQ PLGSQIIHSQ  180
PSYALHLRKS GNELPMEKRL RAIEELSLKG IPPTNLKQLL MECARAFYEN ELENFEKLVE  240
TARGAVSITG EPIQRLGAYM LEGLIARKEA SGTNIYRTLR CKEPEGKDLL SYMHILYEIC  300
PYLKFGYMAA NGAIAEACRN EDRIHIVDFQ IAQGTQWMTL LQALAARPSG APHVRITGID  360
DPVSQYARGE GLAAVGKRLA AISEKFNIPV EFHAVPVFAP EVTRDMLCIR PGEALAVNFP  420
LQLHHTPDES VDVTNPRDGL LRMVKALNPK VVTLVEQESK TNTAPFLPRF WETLEYYSAI  480
FESIDVTMPR DRKERINVEQ HCLARDIVNI IACEGKERVE RHELFGKWKS RFTMAGFRQY  540
PLSSYVNSVI RGLLRCYSEH YTLVEADGAM LLGWKDRNLI SASAWH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-62	218	586	6	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269\|PubMed:12591613}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269\|PubMed:12591613}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027064982.1	0.0	scarecrow-like protein 21
Swissprot	Q69VG1	0.0	CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBL	A0A068UBH1	0.0	A0A068UBH1_COFCA; Uncharacterized protein
STRING	Gorai.002G080600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3441	24	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48150.2	1e-176	GRAS family protein

Publications ? help Back to Top
Day RB, et al. Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells. Plant Mol. Biol., 2004. 54(2): p. 261-72 [PMID:15159627]