PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

WRKY

Protein Properties

Length: 338aa MW: 37498 Da PI: 7.0827

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc05_g09630	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	105.4	3e-33	197	254	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCts++C vkk+vers +d ++v++tYeg+Hnh+ Cc05_g09630 197 EDGYRWRKYGQKAVKNSPFPRSYYRCTSQKCIVKKRVERSFQDSSIVITTYEGQHNHH 254 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.9E-34	181	256	IPR003657	WRKY domain
SuperFamily	SSF118290	7.59E-29	189	256	IPR003657	WRKY domain
PROSITE profile	PS50811	31.8	191	256	IPR003657	WRKY domain
SMART	SM00774	3.7E-38	196	255	IPR003657	WRKY domain
Pfam	PF03106	1.0E-25	197	254	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MSDHHRNDGY HYGTNSFYHD YMGTGGSTST FPFFGGGNSL MYNQPSTSQN LAGSSSAYDP 60 TSYMSFTDCL QGTAADYNNL SGAFDMSCNS LPDQSVCPVD NSSSDKNTTS LGEAAAGAAT 120 TSAENPRTPV SSLSCSSNET GVEEESSKSN TTDLQTKGSE DRDDKSKKLN KPKKKGEKKP 180 REPRFAFLTK SDIDHLEDGY RWRKYGQKAV KNSPFPRSYY RCTSQKCIVK KRVERSFQDS 240 SIVITTYEGQ HNHHCPATLR GNAAAMLSPS FLSSNSASLP TFPPEFITHM LPSTSRNYQN 300 PPYYQNFNPQ DQQFQLPHDY TNFFQDMNPS FMHKPEP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	6e-26	189	257	10	78	Probable WRKY transcription factor 4
2lex_A	6e-26	189	257	10	78	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027063441.1	0.0	WRKY transcription factor 71-like
Swissprot	Q8VWJ2	3e-54	WRK28_ARATH; WRKY transcription factor 28
TrEMBL	A0A068UCE8	0.0	A0A068UCE8_COFCA; Uncharacterized protein
STRING	VIT_12s0028g00270.t01	1e-97	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1485	24	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29860.1	5e-50	WRKY DNA-binding protein 71

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kim SH, et al. Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis. Mol. Cells, 2014. 37(11): p. 833-40 [PMID:25358503] Zhao L, et al. KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535 [PMID:29288215]